PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.001G141900.4 | ||||||||
Common Name | PHAVU_001G141900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | C3H | ||||||||
Protein Properties | Length: 225aa MW: 23716.9 Da PI: 9.1959 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.9 | 2e-09 | 30 | 55 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt++C+ f Ck+Gd+C+FaHg+ Phvul.001G141900.4 30 KTRICNKFNTAEGCKFGDKCHFAHGE 55 8***********************96 PP | |||||||
2 | zf-CCCH | 36 | 1.2e-11 | 192 | 216 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +f++ G C +G+rC+FaHg Phvul.001G141900.4 192 FKTKLCENFSK-GSCTFGERCHFAHG 216 69*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 5.0E-14 | 26 | 58 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-8 | 27 | 59 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.61 | 28 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.6E-4 | 28 | 55 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-6 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 1.11E-15 | 87 | 168 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 2.2E-12 | 96 | 166 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.948 | 97 | 161 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.5E-16 | 97 | 165 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 2.76E-15 | 99 | 162 | No hit | No description |
Pfam | PF00013 | 5.3E-12 | 99 | 162 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 5.1E-15 | 189 | 222 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-8 | 190 | 221 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.23 | 191 | 218 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-6 | 191 | 217 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.9E-9 | 192 | 216 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MNLTPAAPPA PRNVAALPPV PNGSAPSAVK TRICNKFNTA EGCKFGDKCH FAHGEWELGK 60 HIAPSFDDHR AMGPTASGRF AGRMEPSPGP ATSFGSHATA KISVEASLAG AIIGKGGVNS 120 KQICRQTGAK LSIREHESDP NIRNIELEGN FEQIKEASNM VKDLLLTLQM SASSKANQGV 180 PGAPIREHGS NFKTKLCENF SKGSCTFGER CHFAHGAAEL RKSV* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00113 | ampDAP | Transfer from AT3G12130 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.001G141900.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007162318.1 | 1e-165 | hypothetical protein PHAVU_001G141900g | ||||
Refseq | XP_007162319.1 | 1e-165 | hypothetical protein PHAVU_001G141900g | ||||
Swissprot | Q7F8R0 | 9e-76 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | V7CY57 | 1e-164 | V7CY57_PHAVU; Uncharacterized protein | ||||
STRING | XP_007162316.1 | 1e-163 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 1e-65 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.001G141900.4 |
Entrez Gene | 18641383 |