PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G141900.1
Common NamePHAVU_001G141900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 296aa    MW: 31402.6 Da    PI: 9.5952
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G141900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.42.9e-09101126227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         kt++C+ f     Ck+Gd+C+FaHg+
  Phvul.001G141900.1 101 KTRICNKFNTAEGCKFGDKCHFAHGE 126
                         8***********************96 PP
2zf-CCCH35.41.8e-11263287126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt+lC +f++ G C +G+rC+FaHg
  Phvul.001G141900.1 263 FKTKLCENFSK-GSCTFGERCHFAHG 287
                         69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.73461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0423462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-63560IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-73659IPR000571Zinc finger, CCCH-type
PfamPF146081.84259No hitNo description
Gene3DG3DSA:4.10.1000.107.5E-1497129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-898130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6199127IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-499126IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-6101126IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.05E-15158239IPR004088K Homology domain, type 1
SMARTSM003222.2E-12167237IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.102.6E-16168236IPR004088K Homology domain, type 1
PROSITE profilePS5008414.948168232IPR004088K Homology domain, type 1
PfamPF000138.7E-12170233IPR004088K Homology domain, type 1
CDDcd001054.03E-15170233No hitNo description
Gene3DG3DSA:4.10.1000.107.6E-15260293IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-8261292IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6262288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.23262289IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-9263287IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDTRKRGRLE LGFNSNGGFK KSKQEMESLS TGVGSKSKPC TKFFSTSGCP FGEGCHFLHY  60
VPGGYNAVAH IMNLTPAAPP APRNVAALPP VPNGSAPSAV KTRICNKFNT AEGCKFGDKC  120
HFAHGEWELG KHIAPSFDDH RAMGPTASGR FAGRMEPSPG PATSFGSHAT AKISVEASLA  180
GAIIGKGGVN SKQICRQTGA KLSIREHESD PNIRNIELEG NFEQIKEASN MVKDLLLTLQ  240
MSASSKANQG VPGAPIREHG SNFKTKLCEN FSKGSCTFGE RCHFAHGAAE LRKSV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G141900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162316.10.0hypothetical protein PHAVU_001G141900g
RefseqXP_007162317.10.0hypothetical protein PHAVU_001G141900g
SwissprotQ7F8R01e-109C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLV7CYE70.0V7CYE7_PHAVU; Uncharacterized protein
STRINGXP_007162316.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-86C3H family protein