PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.001G141600.1 | ||||||||
Common Name | PHAVU_001G141600g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 420aa MW: 46639.4 Da PI: 7.6346 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96.9 | 1.4e-30 | 245 | 299 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rW+++LHe+Fve+v++LGGse+AtPk+il++m+ +gLt+ hvkSHLQkYR+ Phvul.001G141600.1 245 KTRIRWAKDLHEKFVECVNRLGGSEHATPKAILKMMDTDGLTIFHVKSHLQKYRI 299 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.15E-15 | 243 | 299 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-26 | 243 | 300 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.3E-22 | 245 | 300 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.4E-7 | 249 | 298 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 9.2E-20 | 330 | 376 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 420 aa Download sequence Send to blast |
MNENKVHWGG LIQQTHGLSG DFNSEFGNHY CQYFDIRQAW NMGPLAMVGG EATDQLPNIG 60 HVKSSGTIIS RFESPASAFY ATENCMGFAE YDCQVGIQPQ LSKINDLEFP LYQSPRENLF 120 LDSANQPDSS YDLSNTLQSI VKSQLNNNQC RVSPESSSKI SCGNFPTTKF LPIEQQKLFI 180 DGVIRGSSFP NKGSQDHMVA CGSFNLPVAH LRFSSEIEKL SPTLSAASVS TVGNSASNGA 240 VVSSKTRIRW AKDLHEKFVE CVNRLGGSEH ATPKAILKMM DTDGLTIFHV KSHLQKYRIA 300 KFIPEPSQGK SDKRTHTKNL HHLDVKTGLQ IREALKLQLD AQRCLHEQLE VQRKLQLRIE 360 EQGRQLKKMF DQQQKTSNNL LYAHDSATDE TTITHKDGEV SVSEGANNSF FTSKASPSQ* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-22 | 245 | 302 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-22 | 245 | 302 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-22 | 245 | 302 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-22 | 245 | 302 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-22 | 245 | 302 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-22 | 245 | 302 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-22 | 245 | 302 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-22 | 245 | 302 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.001G141600.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KT031205 | 0.0 | KT031205.1 Glycine max clone HN_CCL_162 MYB/HD-like transcription factor (Glyma19g32850.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007162313.1 | 0.0 | hypothetical protein PHAVU_001G141600g | ||||
TrEMBL | V7CVV7 | 0.0 | V7CVV7_PHAVU; Uncharacterized protein | ||||
STRING | XP_007162313.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3740 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06800.1 | 1e-68 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.001G141600.1 |
Entrez Gene | 18641380 |