PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G141000.1
Common NamePHAVU_001G141000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family SBP
Protein Properties Length: 358aa    MW: 38203.4 Da    PI: 8.7932
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G141000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP137.93e-4369145177
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                         +CqvegC +dls+ak y++rhkvC +hsk+p+v+v+gl+qrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ 
  Phvul.001G141000.1  69 RCQVEGCMVDLSDAKAYYSRHKVCGMHSKSPTVIVAGLQQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPP 145
                         6**************************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.3E-3563131IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.25767144IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.58E-4168149IPR004333Transcription factor, SBP-box
PfamPF031108.5E-3370143IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGSDAAATKL SSSESLNGLK FGQKIYFEDV GLATPASSLT SAAAGVTSSS SSSSRKGRGG  60
SVQPAQPPRC QVEGCMVDLS DAKAYYSRHK VCGMHSKSPT VIVAGLQQRF CQQCSRFHQL  120
PEFDQGKRSC RRRLAGHNER RRKPPPSSLL TSRYARLSSS AFDNSGRGGN FLMELASYPK  180
LSLRNSLPTS RSSELAPGSQ TSTLSWHGNS ETPSDIFLQG SVGGTSFAGH PPGESYPGVS  240
DSSCALSLLS SQAWGSRNTV PSLGLNNMIN FNGTPMTQLT ASSHGASLHE LPNTSWCFKG  300
IDSGDCSPEV VPNLGLGHIS QPLNGQLHGE LDLSQQSRRH YMDLEQSRTY ESAHWSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-32701431184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G141000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162307.10.0hypothetical protein PHAVU_001G141000g
TrEMBLV7CZH00.0V7CZH0_PHAVU; Uncharacterized protein
STRINGXP_007162307.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.14e-61squamosa promoter binding protein-like 9