PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G138600.1
Common NamePHAVU_001G138600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 397aa    MW: 43922.9 Da    PI: 9.683
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G138600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.25.9e-13324369655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR ri +++ +L+el+P+      k  s ae+L +Av+YIk+Lq
  Phvul.001G138600.1 324 SIAERVRRTRISERIRKLQELVPNM----EKQTSTAEMLDLAVDYIKNLQ 369
                         689*********************7....477*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.459318368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-16321383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.95E-12322371No hitNo description
Gene3DG3DSA:4.10.280.101.1E-13323381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-10324369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11324374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MDSNSRYQLQ QQHQPNSGLL RFRSAPTQVL ANFKQAEASI NANPWEGSEP LLRFFNSGDT  60
LDTTSPTLRE FVDNKVSNDN KQPQESTISS SSSSLSPLSR MNSQQGYSTS VLPSGYPRHD  120
STVTVTSSMM MGSMGMDQSG KSFNPNLLRQ SSFPSGNFSN NISFHNGYDA MKGVENFGGV  180
NGNDGELRIS MNRMKNHISF SPRSPSLGIL SPTSKMGSEG LRVTSPEDGR QGGSNGDATY  240
YGPGFPCASW NETPNPKRQR NSNDELLSGD QNGELGNQVH SLSHHLSLPR TSSDMFAMDN  300
LLQFNDSVPC KIRAKRGFAT HPRSIAERVR RTRISERIRK LQELVPNMEK QTSTAEMLDL  360
AVDYIKNLQN QFKTLSERRA KCKCIKMQKS ETDKIA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G138600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162279.10.0hypothetical protein PHAVU_001G138600g
TrEMBLV7CY230.0V7CY23_PHAVU; Uncharacterized protein
STRINGXP_007162279.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.13e-57bHLH family protein