PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G138200.3
Common NamePHAVU_001G138200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 246aa    MW: 26317.4 Da    PI: 7.911
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G138200.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.42.2e-07211237430
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPka 30 
                         +h+ +Er RR++iN ++  L+el+P +
  Phvul.001G138200.3 211 SHSLAERARREKINARMKLLQELVPGC 237
                         8************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.60E-5205244No hitNo description
SuperFamilySSF474596.67E-8205239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.579207245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-8210238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-5211237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEQAPVGLRG SVHDGATLES IQFNEEIQGI MAPAPAPENA NSFTALLELP PTQAVELLHS  60
PDSDGTRNPL NCHVSANHKP YLLNSFGGNL TFPSNAALIE RAAKLSVFAG QNSSSPGEAR  120
LLPAGSGSNL DRVKNEPQET DSNPCSTQGC VSDPAVENKN ERTAKRKERE KKVTVKGSSK  180
KIKSVADETS GDGEKLPYVH VRVRRGQATD SHSLAERARR EKINARMKLL QELVPGCDKV  240
AQTSC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G138200.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162275.10.0hypothetical protein PHAVU_001G138200g
SwissprotQ3EAI14e-60BH060_ARATH; Transcription factor bHLH60
TrEMBLV7CVY51e-180V7CVY5_PHAVU; Uncharacterized protein
STRINGXP_007162273.11e-176(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.22e-57bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]