PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.001G137600.1 | ||||||||
Common Name | PHAVU_001G137600g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 219aa MW: 24504.2 Da PI: 4.6751 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.7 | 5e-12 | 27 | 75 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++GV++d ++g+W A+ ++ + r+ lg f+t+eeAa+a++ a +l+g Phvul.001G137600.1 27 FRGVSRDFSTGKWQAY---LDKG--NdDRIFLGLFDTEEEAARAYDFASIRLKG 75 8***************...5442..34*******************88777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.23E-17 | 25 | 82 | No hit | No description |
SuperFamily | SSF54171 | 1.57E-14 | 25 | 84 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-14 | 26 | 83 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-14 | 26 | 89 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.687 | 26 | 83 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-7 | 27 | 75 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MTDMSKTEVV DSVRMLSFSF MKSISMFRGV SRDFSTGKWQ AYLDKGNDDR IFLGLFDTEE 60 EAARAYDFAS IRLKGLSAIT NFSIRFYDVD AILLGQTDDE KMVYESKVTV PVEDTQHFEV 120 FQNITGQGSS TMVYGSNEGN LNRVGEEEVE MPLMSGNTEE QANSVALASL EGNSSTTNVP 180 LQRESDTTRN VDRSGGQRST ARERFNAYKK FIKRPRPS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 212 | 216 | KRPRP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.001G137600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 9e-52 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007162260.1 | 1e-160 | hypothetical protein PHAVU_001G137600g | ||||
TrEMBL | V7CVX0 | 1e-159 | V7CVX0_PHAVU; Uncharacterized protein | ||||
STRING | XP_007162260.1 | 1e-160 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF35204 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 3e-25 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.001G137600.1 |
Entrez Gene | 18641338 |