PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G136100.1
Common NamePHAVU_001G136100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 281aa    MW: 31503.1 Da    PI: 4.8806
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G136100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.5e-202978255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+GVr++  +g+WvAeIr+p++   r+r +lg+f taeeAa a+++a+++l+g
  Phvul.001G136100.1 29 EYRGVRQRT-WGKWVAEIREPKK---RTRLWLGSFATAEEAAIAYDEAARRLYG 78
                        69****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.30E-312888No hitNo description
SMARTSM003801.7E-372992IPR001471AP2/ERF domain
PfamPF008477.9E-132978IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-302987IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-212987IPR016177DNA-binding domain
PROSITE profilePS5103222.5762986IPR001471AP2/ERF domain
PRINTSPR003673.4E-103041IPR001471AP2/ERF domain
PRINTSPR003673.4E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDTCKKSPLK PWKKGPTRGK GGPQNASCEY RGVRQRTWGK WVAEIREPKK RTRLWLGSFA  60
TAEEAAIAYD EAARRLYGPD AYLNLPHLLP RSTSPITPGK FKWFPSKNFI SMFPSCGLLN  120
VNAQPSVHLI HQRLQELKQN TVERQSPNST FNDPEAEIQN VDATNDGESP PKDSQTSSSE  180
VLGDLQEKPQ IDLHEFLQQL GILKEERQSN RTDSTESSTV PEAVLRDDND ELGVFSDTSL  240
NWEALIEMHG IAGIEELEST QLEAYGPNDD LTFSTSIWNF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-183086360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G136100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162244.10.0hypothetical protein PHAVU_001G136100g
SwissprotQ9SVX54e-85DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLV7CXZ40.0V7CXZ4_PHAVU; Uncharacterized protein
STRINGXP_007162244.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54773150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.14e-76ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]