PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G131300.1
Common NamePHAVU_001G131300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family AP2
Protein Properties Length: 418aa    MW: 46658 Da    PI: 9.0566
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G131300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.7e-1758117155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  Phvul.001G131300.1  58 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 117
                         57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.2E-1358117IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-1758126IPR016177DNA-binding domain
PROSITE profilePS5103220.12659125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-1559126IPR001471AP2/ERF domain
SMARTSM003801.9E-2559131IPR001471AP2/ERF domain
PRINTSPR003674.1E-56071IPR001471AP2/ERF domain
PRINTSPR003674.1E-5107127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MASSSSDPGK SAETSEVAVA TDQLLLYRGL KKAKKERGCT AKERISKMPP CAAGKRSSIY  60
RGVTRHRWTG RYEAHLWDKS TWNQNQNKKG KQVYLGAYDD EEAAARAYDL AALKYWGPGT  120
LINFPVTDYT RDLEEMQNVS REEYLASLRR KSSGFSRGLS KYRGLSSRWE SSYGRMSGSD  180
YFNSMHYGAG DDSAAESEYV SGFCIERKID LTSHIKWWGS NKTRHSDSGT RLSEEKKLGS  240
AGDICSELKQ LEQKVQPTEP YQMPQLGRPH NEKKQRSSSV SALSILSQSA AYKSLQEKAS  300
KRQENSIDND ENENKNTVNK LDHGKAVEKP SNHDGGNDRL DIAMGMSGTM PLQRNVYPLT  360
PFLSQPLLTA YNTVDPMVDP VLWTSLVPPV HPAGLSRTTE VTKTETSSSY TMFQPEE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G131300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310740.0KT031074.1 Glycine max clone HN_CCL_189 AP2-EREBP transcription factor (Glyma03g29240.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162184.10.0hypothetical protein PHAVU_001G131300g
SwissprotQ8GWK21e-168AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLV7CXU80.0V7CXU8_PHAVU; Uncharacterized protein
STRINGXP_007162184.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60072936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-156AP2 family protein