PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G121200.1
Common NamePHAVU_001G121200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 248aa    MW: 27901.5 Da    PI: 8.8803
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G121200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.7e-1476122354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+e+E+rRR+riNs ++eLr+llP +      K +Ka+ L k+v+ +k+L
  Phvul.001G121200.1  76 KNHKEAEKRRRERINSHLDELRTLLPCN-----SKTDKASLLAKVVQRVKEL 122
                         58*************************8.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-1470130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.96773122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.42E-1276125No hitNo description
PfamPF000102.0E-1176122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-1477131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-1379128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.3E-4162225No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MHHFAMDNSH LLQFLPNTTA TNTTNPFFHT APHTTNIMHQ HHTLSNNSSS NNFYPFHVSQ  60
ITPTPSHQDR ALAAMKNHKE AEKRRRERIN SHLDELRTLL PCNSKTDKAS LLAKVVQRVK  120
ELKQQTSEIT ELETVPSETD EITVLSTGGD YGGDGRLVFK ASLCCEDRSD LIPDLIEILN  180
SLHLKTLKAE MATLGGRTRN VLVVAADKEH SIESINFLQN SLKSLLDRSN SSDRSKRRRG  240
LDRRLMS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G121200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162071.10.0hypothetical protein PHAVU_001G121200g
SwissprotO806741e-76BH106_ARATH; Transcription factor bHLH106
TrEMBLV7CXP70.0V7CXP7_PHAVU; Uncharacterized protein
STRINGXP_007162071.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.12e-72bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]