PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.001G119500.1 | ||||||||
Common Name | PHAVU_001G119500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | G2-like | ||||||||
Protein Properties | Length: 312aa MW: 33920.8 Da PI: 6.9162 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96.6 | 1.8e-30 | 108 | 161 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Phvul.001G119500.1 108 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 161 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.05E-20 | 105 | 165 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.059 | 105 | 164 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-30 | 107 | 166 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.4E-24 | 109 | 161 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-7 | 111 | 160 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MKEEDSNWFS RWEEELPPPE DLMPLSQTLI TPDLAMAFDI RNPHTTNLNT AQQLQHQQQQ 60 QPPQQQQQQP SNPSSLPNPQ QPTSAEFADS GELGSGTAGE EPARTLKRPR LVWTPQLHKR 120 FVDAVAHLGI KNAVPKTIMQ LMSVDGLTRE NVASHLQKYR LYLKRMQGIS AAGPGGPGGG 180 ASGAVADPAT DHLFASSPVP AHFLHPATRP NSDHFLPFVP VPALHHHQQQ QQQQMVAAAQ 240 YHRQVGHFGS PPNGHFENPF MSRPNLQRIG GGGGGPVHNH HSVSGYVEDM ESANAASGGR 300 KVLTLFPTGD D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 1e-31 | 108 | 164 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.001G119500.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007162050.1 | 0.0 | hypothetical protein PHAVU_001G119500g | ||||
Swissprot | O22210 | 4e-68 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | V7CV76 | 0.0 | V7CV76_PHAVU; Uncharacterized protein | ||||
STRING | XP_007162050.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8542 | 30 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10760.1 | 1e-93 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.001G119500.1 |
Entrez Gene | 18641150 |
Publications ? help Back to Top | |||
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