PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G106800.1
Common NamePHAVU_001G106800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 361aa    MW: 40164.1 Da    PI: 7.8252
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G106800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.7e-18106151147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg W + Ed++l+++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
  Phvul.001G106800.1 106 RGHWRPAEDDKLKELVAQYGPQNWNLIAEHLE-GRSGKSCRLRWFNQ 151
                         899*****************************.***********996 PP
2Myb_DNA-binding49.41e-15161201446
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         + +eE+e+l+ a+k++G++ W+ Iar ++ gRt++ +k++w+ 
  Phvul.001G106800.1 161 FCEEEEERLLTAHKMYGSK-WAMIARLFP-GRTDNAVKNHWHV 201
                         558****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.944101156IPR017930Myb domain
SMARTSM007172.1E-15105154IPR001005SANT/Myb domain
SuperFamilySSF466897.34E-28106199IPR009057Homeodomain-like
PfamPF002493.9E-17106151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-25107159IPR009057Homeodomain-like
CDDcd001678.24E-14109150No hitNo description
PROSITE profilePS5129418.787157207IPR017930Myb domain
SMARTSM007176.7E-12157205IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-18160206IPR009057Homeodomain-like
PfamPF002491.5E-12161200IPR001005SANT/Myb domain
CDDcd001678.30E-7169200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0071367Biological Processcellular response to brassinosteroid stimulus
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGSSSWCFNN VVGEGFNGVM SFIPSSFHVG SQAPPLGHDK GFLGPNLEMS LQMLCPSVVQ  60
PQESREKKRT SDEGVANKKF SLKRGEEEEA NGFISGKKGF TKLCARGHWR PAEDDKLKEL  120
VAQYGPQNWN LIAEHLEGRS GKSCRLRWFN QLDPKINKKC FCEEEEERLL TAHKMYGSKW  180
AMIARLFPGR TDNAVKNHWH VIMSRRQREQ SSGVYRRRKP HINESFLKGL NLTLSNNATS  240
DESTISNTID ESASTCTNLS LTPSSAKLNP PFGLLHQPGE SREDVWLNKY FGGWNGSEAV  300
GKRLMGVDQA SFSDTNSEVS VSESVITNRS NLSISEEKEG ETMGDKINMS FIDFIGVGTT  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-321062067107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00516DAPTransfer from AT5G17800Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G106800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-164AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161897.10.0hypothetical protein PHAVU_001G106800g
TrEMBLV7CYA70.0V7CYA7_PHAVU; Uncharacterized protein
STRINGXP_007161897.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.16e-70myb domain protein 56