PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.001G101000.1

Common Name

PHAVU_001G101000g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

bZIP

Protein Properties

Length: 314aa MW: 34659.9 Da PI: 6.7281

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.001G101000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	51.2	2.7e-16	243	288	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 +r++r++kNRe+A rsR+RK+a++ eLe kv Le+eN++Lk ++e Phvul.001G101000.1 243 RRQKRMIKNRESAARSRARKQAYTHELEIKVWHLEEENERLKRQNE 288 79***************************************96554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	8.5E-14	238	288	No hit	No description
SMART	SM00338	4.5E-13	239	311	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.036	241	286	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.63E-11	243	289	No hit	No description
CDD	cd14707	2.28E-24	243	288	No hit	No description
Pfam	PF00170	2.5E-13	243	288	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	246	261	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MGSQGGAVQE PKSGCLAREG SLYNLTLDEV HNQLGNLGKP LGSMNLDELL KGVWSAESGS 60 DAYMQQGQVA SAGSSLNPQG SLTLCGDLSK KTIDEVWRDM QQKKSVSQER ERQPTLGEMT 120 LEDFLVKAGV TTEPFSNEDS AMAMPGVDSQ HNTSQHAHWL QYELPSVQQQ PQQQHQNQQN 180 SMMPGFSGFM TVQQPMPIVV NPILDAGYSE AMPSSLMGAL SDSQTAGRKR AASGNVIEKT 240 VERRQKRMIK NRESAARSRA RKQAYTHELE IKVWHLEEEN ERLKRQNEIE KVLPSAPPPD 300 PKHQLRRTSS APL*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00409	DAP	Transfer from AT3G56850	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.001G101000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007161821.1	0.0	hypothetical protein PHAVU_001G101000g
Swissprot	Q9LES3	1e-106	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	V7CX07	0.0	V7CX07_PHAVU; Uncharacterized protein
STRING	XP_007161821.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1320	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	1e-109	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Phvul.001G101000.1
Entrez Gene	18640956

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]