PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G100500.1
Common NamePHAVU_001G100500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 399aa    MW: 45127.4 Da    PI: 6.9595
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G100500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM186.46.4e-58161431129
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdee++++yL++kv+++++++  +i e+d++k+ePwdLpkk+k +ekewyfF+++d+ky+tg r+nrat+sgyWkatgkdke
  Phvul.001G100500.1  16 LPPGFRFHPTDEEIITHYLTEKVKNSSFSA-IAIGEADLNKCEPWDLPKKAKIGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKE 105
                         79*************************999.88***************99999************************************** PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                         +++ kg+lvg+kktLvfy+grapkgekt+Wvmhe+rle
  Phvul.001G100500.1 106 IYKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLE 143
                         ***********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-6213168IPR003441NAC domain
PROSITE profilePS5100558.59416167IPR003441NAC domain
PfamPF023651.3E-2917142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MEEPIVLNKG EEPLDLPPGF RFHPTDEEII THYLTEKVKN SSFSAIAIGE ADLNKCEPWD  60
LPKKAKIGEK EWYFFCQKDR KYPTGMRTNR ATESGYWKAT GKDKEIYKGK GNLVGMKKTL  120
VFYRGRAPKG EKTNWVMHEF RLEGKFASYN LPKAAKDEWV VSRVFHKNTD VKKSSIPGLL  180
RINSIGDDLL DYSSLPPLMD PPYGNTNTTN PLSSTKSQSE GYYLPSFSIN NHHQLLIKPE  240
DHHRSYEIPT ISYTSNQANL NNNVNPIGNN TLSQPSNMFS DYYVHQNRIR SSIMPSIEGS  300
GFGNNNNITN HDQAILRAFA AKNNEHLGGI LEKQCKMEQF SSNHSQETGL SNDRNTETSS  360
VVSKQDNMGR NRALYEDLEG PSSVAPLSDL ECLQWDDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-521417315171NO APICAL MERISTEM PROTEIN
1ut4_B1e-521417315171NO APICAL MERISTEM PROTEIN
1ut7_A1e-521417315171NO APICAL MERISTEM PROTEIN
1ut7_B1e-521417315171NO APICAL MERISTEM PROTEIN
4dul_A1e-521417315171NAC domain-containing protein 19
4dul_B1e-521417315171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G100500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312700.0KT031270.1 Glycine max clone HN_CCL_56 NAC transcription factor (Glyma16g04720.1_like1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161814.10.0hypothetical protein PHAVU_001G100500g
SwissprotQ9FK441e-111NAC87_ARATH; NAC domain-containing protein 87
TrEMBLV7CWR80.0V7CWR8_PHAVU; Uncharacterized protein
STRINGXP_007161814.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.11e-105Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]