PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.001G099700.1 | ||||||||
Common Name | PHAVU_001G099700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 232aa MW: 25456.8 Da PI: 5.0574 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.9 | 1.2e-18 | 29 | 78 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +gr++AeIrdps+ + r++lg+f+ta+eAa a+++a+++++g Phvul.001G099700.1 29 RYLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTADEAALAYDRAARAMRG 78 588******.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-28 | 29 | 85 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.3E-32 | 29 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-21 | 29 | 86 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.08E-30 | 29 | 85 | No hit | No description |
PROSITE profile | PS51032 | 20.837 | 29 | 86 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.4E-12 | 30 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-8 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-8 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MNPRTTSSSS KTKKKQTAPE PHQTAWGGRY LGVRRRPWGR YAAEIRDPST KERHWLGTFD 60 TADEAALAYD RAARAMRGSR ARTNFVYADT TPGSSLTPII SPDQQPLPQP DPVLTVDPFS 120 LLGFPSGSSS YDENASASVA ASHFSQQSFF ENNNNNNYYN NNNNDNEKSG STVELPPLPP 180 DITSSMGYEM EHQSGGFYWE ASPMFSAMST VSENVGAESQ VFELGISSYF L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-19 | 30 | 85 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-19 | 27 | 85 | 3 | 62 | ATERF1 |
3gcc_A | 2e-19 | 27 | 85 | 3 | 62 | ATERF1 |
5wx9_A | 7e-19 | 28 | 85 | 13 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.001G099700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007161805.1 | 1e-171 | hypothetical protein PHAVU_001G099700g | ||||
TrEMBL | V7CUK4 | 1e-170 | V7CUK4_PHAVU; Uncharacterized protein | ||||
STRING | XP_007161805.1 | 1e-171 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3904 | 31 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 5e-25 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.001G099700.1 |
Entrez Gene | 18640942 |