PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G086800.1
Common NamePHAVU_001G086800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 322aa    MW: 35848.9 Da    PI: 6.3906
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G086800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.11.4e-121542332298
                         H.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
                  B3  22 faeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                          ae++   ++++e++ + + d++g  +W++k+++  +++s++yvl+ ++ eFv+ +gL+ gD++v +  ++ ++ ++v+++++
  Phvul.001G086800.1 154 AAETFlpALDSKEGILMNMDDKDGtHVWNFKYRFwpNNNSRMYVLE-NTGEFVSTHGLRFGDTIVVY--QHiENNNYVIQARK 233
                         3444477666678999*******999******9989999999***9.******************99..55578878888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010193.2E-5141235IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-15152239IPR015300DNA-binding pseudobarrel domain
CDDcd100171.68E-13152233No hitNo description
SuperFamilySSF1019361.83E-11153231IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-9161233IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MMMDQRQREK LLHKTEACAF VAGVDAELRL VAAPGDITNT NNVNRIINST SSNVSQSHGS  60
GRIHDTNHLG LVAAVTNLGT VHRKKRMPRQ RRSTTTSTTN PTLFMQMHHF DNPFSSKHHQ  120
PNLPSSTPSA SSHVPSSSLH SVKPSTPPPP ARKAAETFLP ALDSKEGILM NMDDKDGTHV  180
WNFKYRFWPN NNSRMYVLEN TGEFVSTHGL RFGDTIVVYQ HIENNNYVIQ ARKGSEEDEF  240
MEQSSETVDD MFLSDLEVNK PGCFNINYPA VNDTGMSFIY DTTFSNDSPL DFLGGSMTNL  300
SRIGPVETFG SVENLSLDDF Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-401312396111B3 domain-containing transcription factor FUS3
6j9b_D2e-401312396111B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G086800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-103AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161647.10.0hypothetical protein PHAVU_001G086800g
TrEMBLV7CXN90.0V7CXN9_PHAVU; Uncharacterized protein
STRINGXP_007161647.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98582838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.15e-59B3 family protein