PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.001G082900.1 | ||||||||
Common Name | PHAVU_001G082900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | TCP | ||||||||
Protein Properties | Length: 372aa MW: 39043.6 Da PI: 6.5117 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 117.4 | 1.8e-36 | 24 | 116 | 2 | 88 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec.eaesssssas.ns 85 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l+ + + + ++ ++++s +++ n+ Phvul.001G082900.1 24 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKAAIDQLAHLppwkpT-LPTTNYlNDDESDKTNPnNP 113 79**************************************************************766641.22222222222211111011 PP TCP 86 ssg 88 +s+ Phvul.001G082900.1 114 NST 116 111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.7E-32 | 24 | 109 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.776 | 26 | 84 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MVRGGGGGGG EIVEVEGGHI VRSTGRKDRH SKVCTAKGPR DRRVRLSAHT AIQFYDVQDR 60 LGYDRPSKAV DWLINKAKAA IDQLAHLPPW KPTLPTTNYL NDDESDKTNP NNPNSTANAN 120 TNPDAEILNQ FNENLENDGG GGGGAGGGGG GGGSSYLPLD NDTIRSFFPI TTSSLIQFQS 180 YPPDLLSRTS SQDLRLSLQS LQDPIMLHHN QNEPVLFAGA GFDNMVAWNN SGNANNDTHG 240 GGGGGGFVLN APSPLPGPAT VASPAVVFGY GNGNGQGQYF SQRGPLQSSN TPSVRAWIDA 300 PSFVAAADHY HRHHYLSPAA AAAALVYQSS PSSAFAPGGF SGFRVPARIQ GEEEHDGVSD 360 KPSSASSDSR R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-20 | 31 | 84 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-20 | 31 | 84 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.001G082900.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007161598.1 | 0.0 | hypothetical protein PHAVU_001G082900g | ||||
Swissprot | Q8LPR5 | 5e-82 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | V7CTS6 | 0.0 | V7CTS6_PHAVU; Uncharacterized protein | ||||
STRING | XP_007161598.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53230.1 | 1e-52 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.001G082900.1 |
Entrez Gene | 18640763 |