PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G080900.1
Common NamePHAVU_001G080900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 755aa    MW: 83580.7 Da    PI: 4.5816
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G080900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.60.000135646011355
                         HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R++i +++ eLr ++P+      +K s  + L ++++Y+  Lq
  Phvul.001G080900.1 564 RQQIQDCIKELRGIIPNG-----GKCSIDSLLDRTIRYMLFLQ 601
                         89**************98.....7999999*********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-13390IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000830.00231542605No hitNo description
PROSITE profilePS5088811.084551600IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-6564607IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-4564605IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    Send to blast
MHPQVHLLGQ GIVGEAAFTG KHSWVHSDGQ THYWNLSGQD ICEDDSCLLQ QFCSGIKTIV  60
VIPVKALGVI QFGSRNKILE RVEFLEQTQS MLTEIDDDDM GMFDMSENAV LPLLYQSNDL  120
NGMLASVSSA SPNDPFPTHY KNYEDAVASF QGDSSYLGDQ LKGTMEAQVV LSERNSTDVL  180
LKPNTSTDNL IAKTPYLGVC DGELSSFDLL EQQLVSSVRA QDVADACFTN ENVFATCKLP  240
VQDSTLVPLC STDGGSFQGK LQYSNQSSVV TDVEFSSSSH ALHGHSENIE PVDMSEEILK  300
FSSMDDLCHW FGPSSEDSIC KAVMTLDNTF SESREFNPTS FDLVGSSTLN DVLLTGLAVY  360
NSNSDGNETS VVMHNAEKGT LDVMETDFSY DQADEWWRNT LTPVVSGVTD TGFSECISQL  420
NSDTLPGTRK RLFSQLGIEE LLRSGANYNP INSSVFECWL SPNKRQTVES SSVNGSTIHF  480
TNLDRSGTRS DLMQPLCDLG STNNLPSKKD TFSKLQATTL VDDSHSINVG KAVPQHPQKP  540
EEQAKPTNKR ARPGESTRPR PKDRQQIQDC IKELRGIIPN GGKCSIDSLL DRTIRYMLFL  600
QSVLKYTDKL QEPSEPKLIE QENEVVLKDS GVADSKNCGI TWAYEVGHET MLCPIIVEDM  660
SPPGQMLIEM LCEVQGIFLE IIDIIRGFGL NILKAKMERK KNKLWARFIV EANRHVTRID  720
VFWSLVHLLQ QTNTSGIDSS NKHWDALHAN SLRS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G080900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161572.10.0hypothetical protein PHAVU_001G080900g
RefseqXP_007161573.10.0hypothetical protein PHAVU_001G080900g
TrEMBLV7CXD50.0V7CXD5_PHAVU; Uncharacterized protein
STRINGXP_007161572.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69551621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.12e-45conserved peptide upstream open reading frame 7