PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G071000.1
Common NamePHAVU_001G071000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 364aa    MW: 40313.9 Da    PI: 6.9221
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G071000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.2e-1755102148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+WT+eEde l++++k+ G g+W+t +++ g+ R++k+c++rw +yl
  Phvul.001G071000.1  55 RGPWTPEEDEVLANYIKREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 102
                         89******************************99************97 PP
2Myb_DNA-binding46.58.5e-15113153648
                         HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Phvul.001G071000.1 113 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 153
                         89***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-2246104IPR009057Homeodomain-like
PROSITE profilePS5129415.6250102IPR017930Myb domain
SuperFamilySSF466891.72E-2852149IPR009057Homeodomain-like
SMARTSM007172.9E-1254104IPR001005SANT/Myb domain
PfamPF002498.1E-1555102IPR001005SANT/Myb domain
CDDcd001672.50E-1057102No hitNo description
PROSITE profilePS5129424.404103157IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-24105158IPR009057Homeodomain-like
SMARTSM007171.2E-13107155IPR001005SANT/Myb domain
CDDcd001671.44E-11113153No hitNo description
PfamPF002491.4E-13113153IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MRNPSSTSTT KNKKSGGNST ATSCSNNSNN NNGSSSNNNG SSNNTPCCTK VGLKRGPWTP  60
EEDEVLANYI KREGEGRWRT LPKRAGLLRC GKSCRLRWMN YLRPSVKRGH IAPDEEDLIL  120
RLHRLLGNRW SLIAGRIPGR TDNEIKNYWN THLSKKLISQ GIDPRTHKPL NPPSIIIPSS  180
STTTTFTVPP PSMPPPMIIN PCHDLTAVDQ GIHAIHHLGQ HHQPPVSNPF DNNSINNQVA  240
AVTDDVSAMG FMDSEDCNYD ININYYSDDA FSSFLNSLIN DDAFASQQHH VQTELPSERC  300
IPLPCDDRVD DPLVSITTAS TSQGYDDDLG VLWESPLVPS TTFTHHVNDP IIKMAHDHHH  360
LHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25531575108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G071000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161463.10.0hypothetical protein PHAVU_001G071000g
SwissprotQ388502e-84MYB5_ARATH; Transcription repressor MYB5
TrEMBLV7CTD60.0V7CTD6_PHAVU; Uncharacterized protein
STRINGXP_007161463.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-82myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]