PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G064500.1
Common NamePHAVU_001G064500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 592aa    MW: 66422.7 Da    PI: 4.698
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G064500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4432e-1352215912374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         ++lL +cA+a+s+g+ e+a++++++l++++s +g+p qR+aay++e+L ar+a+s++ +y+al+++e +   ss++laa+++++ev+P++k
  Phvul.001G064500.1 221 KQLLCDCARALSEGNEEQATSMINNLRQMVSIQGEPSQRIAAYMVEGLVARVASSGKCIYQALRCKEPP---SSDRLAAMQILFEVCPCFK 308
                         589*****************************************************************9...9****************** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                         f++++aN aI eav  e++vHiiDfdisqG+Q+++L+q+Las p+ p+++R+Tgv++pe++  s   ++ +g+rL+k+Aeelg+pfef++ 
  Phvul.001G064500.1 309 FGYIAANGAIAEAVRDEKKVHIIDFDISQGTQYITLIQTLASMPGRPHHVRLTGVDDPETVqrSIGGMSIIGQRLEKLAEELGLPFEFQA- 398
                         ***********************************************************99888899***********************. PP

                GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                         va++++ +++++L+++pgEal+Vn+++qlh++ de+vs+ +erd++L++vk l+Pk+v++veq++++n+++Fl+rf+ea +yysa+fd+l+
  Phvul.001G064500.1 399 VASKTSIVSPSMLNCRPGEALVVNFAFQLHHMRDETVSTVNERDQLLRMVKCLNPKLVTIVEQDMNTNTSPFLQRFVEAYNYYSAVFDTLD 489
                         7****************************************************************************************** PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                         a+lpres++r++vEr++l+++ivn+vaceg++r+er e ++kWr+rl++aGF+p p+s+++ + ++ l+ k + d ++++ee g+l +gW+
  Phvul.001G064500.1 490 ATLPRESQDRMNVERQCLAKDIVNIVACEGEDRIERYEVAGKWRARLTMAGFTPSPMSTNVREAIRKLIIKQYCDRFKIKEEMGALHFGWE 580
                         *************************************************************************888*************** PP

                GRAS 364 drpLvsvSaWr 374
                         d++L+++SaW+
  Phvul.001G064500.1 581 DKNLIVASAWK 591
                         **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.935194571IPR005202Transcription factor GRAS
PfamPF035147.0E-133221591IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MSLVISTELA DTSYGNAKLY TLKGTDVTPD LSSHNFVPDK HRNMYITDSY SSENYEKYFR  60
YSPSEELIEP SSSSISGNSV HPDGASSYLL RASSGASVIV NNPFDTRILS TRRRNAYQSN  120
FESDFVENRS PDSLDFDGEM RLKLQELERV LFSDEEEEEE DIFETVQSME IDPDLAEWAN  180
PLQDMLLHDS PKESSSSDSS NISSISSTTK ETSQNSSQTP KQLLCDCARA LSEGNEEQAT  240
SMINNLRQMV SIQGEPSQRI AAYMVEGLVA RVASSGKCIY QALRCKEPPS SDRLAAMQIL  300
FEVCPCFKFG YIAANGAIAE AVRDEKKVHI IDFDISQGTQ YITLIQTLAS MPGRPHHVRL  360
TGVDDPETVQ RSIGGMSIIG QRLEKLAEEL GLPFEFQAVA SKTSIVSPSM LNCRPGEALV  420
VNFAFQLHHM RDETVSTVNE RDQLLRMVKC LNPKLVTIVE QDMNTNTSPF LQRFVEAYNY  480
YSAVFDTLDA TLPRESQDRM NVERQCLAKD IVNIVACEGE DRIERYEVAG KWRARLTMAG  540
FTPSPMSTNV REAIRKLIIK QYCDRFKIKE EMGALHFGWE DKNLIVASAW K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-6922759026378Protein SCARECROW
5b3h_A5e-6922759025377Protein SCARECROW
5b3h_D5e-6922759025377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G064500.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161385.10.0hypothetical protein PHAVU_001G064500g
RefseqXP_007161386.10.0hypothetical protein PHAVU_001G064500g
RefseqXP_007161387.10.0hypothetical protein PHAVU_001G064500g
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLV7CWT20.0V7CWT2_PHAVU; Uncharacterized protein
STRINGXP_007161385.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]