PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G061200.1
Common NamePHAVU_001G061200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 1005aa    MW: 110428 Da    PI: 5.73
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G061200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.71e-163783148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g WT eEd++l  av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Phvul.001G061200.1 37 KGQWTLEEDDILRTAVEKFKGKNWKKIAECFK-ERTDVQCLHRWQKVL 83
                        799****************************9.************986 PP
2Myb_DNA-binding55.21.7e-1789135148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+W++eEd++++++v++ G + W++ ar+++ gR +kqc++rw ++l
  Phvul.001G061200.1  89 KGPWSKEEDDIIIELVNKNGAKKWSSLARHLP-GRIGKQCRERWVNHL 135
                         79******************************.************996 PP
3Myb_DNA-binding513.4e-16141183145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         + +WT+eE++ l+++++ +G++ W+  +++++ gRt++ +k++w+
  Phvul.001G061200.1 141 KEAWTQEEELALIHYHQIYGNK-WAELSKYIP-GRTDNAIKNHWN 183
                         579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.9823283IPR017930Myb domain
SuperFamilySSF466894.88E-183598IPR009057Homeodomain-like
SMARTSM007173.3E-143685IPR001005SANT/Myb domain
PfamPF002492.0E-143783IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-213895IPR009057Homeodomain-like
CDDcd001673.47E-134083No hitNo description
PROSITE profilePS5129429.20984139IPR017930Myb domain
SuperFamilySSF466894.79E-3086182IPR009057Homeodomain-like
SMARTSM007171.3E-1688137IPR001005SANT/Myb domain
PfamPF002492.1E-1689135IPR001005SANT/Myb domain
CDDcd001679.53E-1591135No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2596142IPR009057Homeodomain-like
PROSITE profilePS5129420.671140190IPR017930Myb domain
SMARTSM007171.3E-15140188IPR001005SANT/Myb domain
PfamPF002491.3E-14141184IPR001005SANT/Myb domain
CDDcd001676.68E-12143183No hitNo description
Gene3DG3DSA:1.10.10.605.9E-22143190IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1005 aa     Download sequence    Send to blast
MDGERSMPAP SYGQVDGAQK VKALHGRTTG PTRRSTKGQW TLEEDDILRT AVEKFKGKNW  60
KKIAECFKER TDVQCLHRWQ KVLNPELVKG PWSKEEDDII IELVNKNGAK KWSSLARHLP  120
GRIGKQCRER WVNHLDPTIK KEAWTQEEEL ALIHYHQIYG NKWAELSKYI PGRTDNAIKN  180
HWNSSVKKKL DSYLTSGVLN QFEPVPHVGN SNQSTRLQCS GDDNCSKRME GEEVSESSQG  240
SANAVRFPSA RGMGSAELQT GEPVCRPNEE CNLRKDHSPS RASCSEPYYV SIDDICIPEI  300
SHQEACTSQF TEQHSHEPGN SISGDCHFNL HSLPNISSMV LGQDSSQLQR DCVASSEICD  360
MVNAPFQTSE GLGVSTSMGP ASLDSLKPEH VLISDDECCR VLFSDSMNDG CFPPVDYIKG  420
EDTVEFSGCT SFPCQSCNIQ MAETGGTSTP QLTCPRCSNN YQGTSSSLSF PPVLSACDDR  480
EGPTANGNHL FGTNGHQLVS RAPANFTYVN YVSSSPCVDD MGTAVMEEAR DILNGTSEEK  540
TNVHTEKEDS GSLCYEPPRF PSLDIPFFSC DLVQSGVDMQ QEFSPLGIRQ FMMSSMNCLT  600
PFRLWDSPSH GDSPDALLKS AAKTFTGTPS ILKKRHRDLL SPLSDKRIDK KLETDMTTKN  660
ISSLDVMFGD NETQEADMPS FKKQSSSACV DDNKENCGQA YKPIKYAIFD EKNSLKDTVD  720
NSKSNVKQQQ LKIEASAAAM EQEPSGVLVE HDVNDLTLSS PDQVGLKSNR GLGSSTKSPK  780
SMNRSLEAVP NQNSHLKLSS KIPRSRINSS SPCVRAKEHE KLSVAVTRVQ APGDNSGEQT  840
RKDGGFEACS IFGGTPFRKG LESPSAWKSP WFFNTFLCSP RLGTEITVED FGYLMSPGDR  900
SYDAIGLLKQ ISEQTAATYA NAKEVLGNET PKAASRKDAS GNEEDKYHGS PNQPGNDSQL  960
ASNALIERRT LDFSECGSPS KVDDNKSSAI SFPSPSSYLL KGCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-63371906159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-63371906159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G061200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161344.10.0hypothetical protein PHAVU_001G061200g
TrEMBLV7CVD30.0V7CVD3_PHAVU; Uncharacterized protein
STRINGXP_007161344.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein