PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.001G046300.1 | ||||||||
Common Name | PHAVU_001G046300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ARR-B | ||||||||
Protein Properties | Length: 592aa MW: 65435.3 Da PI: 6.3292 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.1 | 1.7e-27 | 204 | 257 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wt +LH++Fv+av+qL G +kA+Pk+il+lm+v+ Lt+e+v+SHLQk+Rl Phvul.001G046300.1 204 KARVVWTVDLHQKFVNAVDQL-GFDKAVPKKILDLMNVEKLTRENVASHLQKFRL 257 68*******************.********************************8 PP | |||||||
2 | Response_reg | 78.7 | 1.9e-26 | 21 | 128 | 1 | 108 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 vl vdD+ + +++l+++l++ +y +v+++++++ al+ll +e+++Dl++ D++mp+mdG++ll+ e++lp+i+++ +++++++ + Phvul.001G046300.1 21 VLAVDDDSTCLMILETMLRRCQY-HVTTTKNAKTALTLLrgNENRFDLVISDVQMPDMDGFKLLELVGL-EMDLPVIMMSVNDDPKMVMKG 109 799********************.***************555555*******************87754.558****************** PP HHTTESEEEESS--HHHHH CS Response_reg 90 lkaGakdflsKpfdpeelv 108 + Ga d+l Kp+ +e+ Phvul.001G046300.1 110 ITHGACDYLLKPVRLKEVQ 128 ************9988865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.8E-158 | 1 | 589 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 3.4E-42 | 18 | 158 | No hit | No description |
SuperFamily | SSF52172 | 4.13E-34 | 18 | 143 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 1.5E-30 | 19 | 131 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 40.661 | 20 | 135 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 2.1E-23 | 21 | 128 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.97E-26 | 22 | 134 | No hit | No description |
SuperFamily | SSF46689 | 1.33E-18 | 201 | 261 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.314 | 201 | 260 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-29 | 202 | 261 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-25 | 204 | 257 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.8E-7 | 206 | 255 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 592 aa Download sequence Send to blast |
MTVVEDRMDE LRDEFPIGMR VLAVDDDSTC LMILETMLRR CQYHVTTTKN AKTALTLLRG 60 NENRFDLVIS DVQMPDMDGF KLLELVGLEM DLPVIMMSVN DDPKMVMKGI THGACDYLLK 120 PVRLKEVQNI WQHVVRRRTS DSKERSKSSN QDKANTDSNE RGSVATGNSD QNVKSSRKRK 180 DESDYDNDEQ ENGHDNEESS CHKKARVVWT VDLHQKFVNA VDQLGFDKAV PKKILDLMNV 240 EKLTRENVAS HLQKFRLYLK RRSCAVNREA NMAAALGTTD SSFLTMGSLS GVGHLQSLTG 300 AQHFHNNTFR PFGSGGMAGR LNTSFGVNLH GLPTSEILHL GHAHNFHKSI HEPLKFQQAI 360 IGGNQNVIQG MPMSTGLDQF QRKGVNIGVR PIQSISPFLD VQPNFSLSNK LPDLMPKSTM 420 GCSASPVLDV SNNALVLKAD GENTQGGGLI FGQTSLASQN SQFSMPLLDQ GRCSDIWSNT 480 VQSSGTNSYP PTETFQWRNL SGASSITSLS NQSLDSLKDM HSQGVLFANN SGQISNSVVP 540 FQGWDDNNDD SSFPSTIFGN SVDSLIDTDG HTSINSIYNK NTDFSFFELR D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 3e-23 | 200 | 263 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). Involved in activating SHY2 during meristem growth and controls PIN expression via activation of SHY2 (PubMed:20605455). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:20605455}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.001G046300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007161146.1 | 0.0 | hypothetical protein PHAVU_001G046300g | ||||
Swissprot | P62598 | 1e-124 | ARR12_ARATH; Two-component response regulator ARR12 | ||||
TrEMBL | V7CV59 | 0.0 | V7CV59_PHAVU; Two-component response regulator | ||||
STRING | XP_007161146.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-119 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.001G046300.1 |
Entrez Gene | 18640378 |