PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.001G044500.1 | ||||||||
Common Name | PHAVU_001G044500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 230aa MW: 25706.2 Da PI: 4.5392 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.2 | 3.6e-17 | 38 | 87 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr +k +g+Wv+eIr p++ r r++lg++ t e+Aa+a +aa +l+g Phvul.001G044500.1 38 VYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYETQEKAARAFDAALYCLRG 87 7*****999.**********933...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.85E-20 | 38 | 96 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.97 | 38 | 95 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-10 | 38 | 87 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-29 | 38 | 96 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-29 | 38 | 101 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-9 | 39 | 50 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.47E-27 | 39 | 97 | No hit | No description |
PRINTS | PR00367 | 2.5E-9 | 61 | 77 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MVKPAITTVD SFSSSSSSSP PASCYDSFST NNSSGCKVYK GVRKRKWGKW VSEIRLPNSR 60 ERIWLGSYET QEKAARAFDA ALYCLRGKAA SFNFPDTPQH MEMAAVEIPC SHQEIQEVAA 120 KFANKEGVLA EEEEARSESK SNDTTDTNTT FPGTNNHAQV DQDTMDWTFM NMLDDLNVSD 180 FGLFGAEKAE FLCPTTQTPL LFHNGDEIEV DDHDHDAFSN HSFLWSWNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-15 | 39 | 95 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 39 | 45 | KGVRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.001G044500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 2e-99 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007161121.1 | 1e-173 | hypothetical protein PHAVU_001G044500g | ||||
Swissprot | Q84QC2 | 2e-37 | ERF17_ARATH; Ethylene-responsive transcription factor ERF017 | ||||
TrEMBL | V7CV04 | 1e-172 | V7CV04_PHAVU; Uncharacterized protein | ||||
STRING | XP_007161121.1 | 1e-173 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1479 | 33 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19210.1 | 3e-39 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.001G044500.1 |
Entrez Gene | 18640360 |
Publications ? help Back to Top | |||
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