PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G037000.1
Common NamePHAVU_001G037000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HSF
Protein Properties Length: 374aa    MW: 42462.6 Da    PI: 4.6615
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G037000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.11e-36451362102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y+++ed+++++++sws++ nsfvv+d+++f++++Lp+yFkh+nf+SF+RQLn+YgF+kv+ ++         weF+++ F +g+++
  Phvul.001G037000.1  45 FLTKIYDMVEDPSTDSVVSWSTSCNSFVVWDSHKFSTNILPRYFKHNNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLAGQRH 126
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++ikrk++
  Phvul.001G037000.1 127 LLKSIKRKRK 136
                         *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-3841134IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.8E-6041134IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.77E-3442134IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.8E-3245134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.7E-204568IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.7E-208395IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434084108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.7E-2096108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MEGIRVKEEE TVTCGGGGGS SSSSSSFSFS PQPMEGLNEV GTPPFLTKIY DMVEDPSTDS  60
VVSWSTSCNS FVVWDSHKFS TNILPRYFKH NNFSSFIRQL NTYGFRKVDP DRWEFANEGF  120
LAGQRHLLKS IKRKRKVSLS MQERGGGACV EVGEFGLEGE LERLKRDRNI LMAEIVRLRH  180
QQLNSRNQLS AMETRLQATE KKQQKMMIFL AKALKNPSFM QQLVHNKTPQ SREMLDAEIN  240
RKRRLIASQS LENLQQDDPV TLVDYPSLDQ DLATMKPEMD TFFSPAFDSE HGNEIKEPAL  300
DSDIAASQSY FGDTILEDFF IKDLVNEDPK DEVIIGDCSQ IDVPLEDLVA NSDDWMEQFQ  360
DHVDHMDYSD SKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-274213426129Heat shock factor protein 1
5d5v_B1e-274213426129Heat shock factor protein 1
5d5v_D1e-274213426129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G037000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161029.10.0hypothetical protein PHAVU_001G037000g
RefseqXP_007161030.10.0hypothetical protein PHAVU_001G037000g
SwissprotP411521e-112HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLV7CSB20.0V7CSB2_PHAVU; Uncharacterized protein
STRINGXP_007161029.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82253143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-105heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]