PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G032200.1
Common NamePHAVU_001G032200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TALE
Protein Properties Length: 399aa    MW: 45705.7 Da    PI: 6.9703
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G032200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.4e-093253602055
                         HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Phvul.001G032200.1 325 YKWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 360
                         5679*****************************885 PP
2ELK37.84.2e-13280301122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELK++LlrKYsgyL+sLkqE+s
  Phvul.001G032200.1 280 ELKNHLLRKYSGYLSSLKQELS 301
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.4E-19136180IPR005540KNOX1
PfamPF037901.7E-20137179IPR005540KNOX1
SMARTSM012567.4E-30187238IPR005541KNOX2
PfamPF037911.9E-24192237IPR005541KNOX2
PfamPF037892.8E-10280301IPR005539ELK domain
SMARTSM011883.5E-7280301IPR005539ELK domain
PROSITE profilePS5121311.296280300IPR005539ELK domain
PROSITE profilePS5007112.989300363IPR001356Homeobox domain
SuperFamilySSF466891.41E-19301376IPR009057Homeodomain-like
SMARTSM003892.1E-13302367IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-27305366IPR009057Homeodomain-like
CDDcd000862.41E-12312364No hitNo description
PfamPF059201.2E-16320359IPR008422Homeobox KN domain
PROSITE patternPS000270338361IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MEEYTNNNHL SENTGPSPSP RPNFLYSSPS GGNHNHHQHQ HQHQHQHHSH HHQHHQFPIN  60
TFHLQSGGAD HCFQSDQVAP HPSVKTEASS SQLHAPIFHY PLMRGNLHNN TTTTTTMHHH  120
PHQQGGSPTS STTEVEAIKA KIIAHPQYSN LLEAYMDCQK IGASPEVVAR MVAAKQEFEA  180
RQRSSGGSRD SSKDPELDQF MEAYYDMLVK YREELTRPIQ EAMDFMRRIE TQLNMLCNGP  240
VRIFSAEDKC EGVGSSEDDQ DNSGGETELP EIDPRAEDRE LKNHLLRKYS GYLSSLKQEL  300
SKKKKKGKLP KDARQKLLNW WELHYKWPYP SESEKVALAE STGLDQKQIN NWFINQRKRH  360
WKPSEDMQFM VMDGLHPQSA TLYMDGHYMA DGHYRLGP*
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G032200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1070020.0HM107002.1 Glycine max KNOX-like DNA-binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160965.10.0hypothetical protein PHAVU_001G032200g
SwissprotO041351e-180KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLV7CS470.0V7CS47_PHAVU; Uncharacterized protein
STRINGXP_007160965.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45843246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-140KNOTTED-like from Arabidopsis thaliana