PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G031200.1
Common NamePHAVU_001G031200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family AP2
Protein Properties Length: 688aa    MW: 75432.5 Da    PI: 7.1206
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G031200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.93.9e-16325384155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Phvul.001G031200.1 325 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 384
                         78*******************988886678446*************************98 PP
2AP245.22.4e-14429478355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Phvul.001G031200.1 429 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 478
                         9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.66E-22325392No hitNo description
SuperFamilySSF541711.18E-16325394IPR016177DNA-binding domain
PfamPF008479.5E-13325384IPR001471AP2/ERF domain
SMARTSM003801.8E-28326398IPR001471AP2/ERF domain
PROSITE profilePS5103219.203326392IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-16326393IPR001471AP2/ERF domain
PRINTSPR003673.4E-6327338IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-18427488IPR016177DNA-binding domain
CDDcd000183.04E-25427488No hitNo description
SMARTSM003804.9E-34428492IPR001471AP2/ERF domain
PROSITE profilePS5103219.282428486IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-18428486IPR001471AP2/ERF domain
PfamPF008471.1E-9429478IPR001471AP2/ERF domain
PRINTSPR003673.4E-6468488IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MKSMNDGNTD DGNNHNWLGF SLSPHMKMEI ASSADPPHHH HHHYYHHPQV SAAAAPCNTV  60
PTNFYTSHLN TSGICYGVGE NSAFHPPLAM MPLKSDGSLC IMEAFTRSQT QVMVPTTSPK  120
LEDFLGGASM GAQDYGGHER EAMALSLDSI YYSSQNAEPE ANRDHPSSLG LLSDPFRQQT  180
HPYYSGLGIY QVEEEAKQPN VTVCSSQMPQ VVEEGIACFK NWVPQRGYSS SQQNLEQQHQ  240
VNNSMGENHG ASGNVGAGVG CGELQSLSLS MSPGSQSSCV TVPTQISSSG TESVVGDAKK  300
RGSAKLGQKQ PVHRKSIDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQTRKGRQV  360
YLGGYDMEEK AARAYDLAAL KYWGPSTHIN FPLENYQTEL EEMKNMSRQE YVAHLRRKSS  420
GFSRGASMYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD VAAIKFRGVN  480
AVTNFDISRY DVERIMASNT LLAGELARRN KESEPRTEAT EYNVVSSQQA ISSSREEAET  540
VNNNDNNEKG SSSDWKMGLY HQQQSNSNNC DMKTMKCGNY RGSAFSVSLQ DLIGIDSVGS  600
SQAMLEESTK IGTHFSNPSS LVTSLSSSRE GSPDKTGPTV LFPKPPVGSK VVTSPIANGV  660
SVGSWFPSQM RPVAMSHLPV FAAWSDT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G031200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160953.10.0hypothetical protein PHAVU_001G031200g
TrEMBLV7CRX50.0V7CRX5_PHAVU; Uncharacterized protein
STRINGXP_007160953.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-136AP2 family protein