PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G031000.1
Common NamePHAVU_001G031000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRF
Protein Properties Length: 609aa    MW: 66260.2 Da    PI: 8.1502
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G031000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.72.4e-24221265145
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                         d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e 
  Phvul.001G031000.1 221 DPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEG 265
                         79****************************************985 PP
2QLQ62.31.3e-21151187137
                 QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                         ++FT++Q+++L++Q+l+yKy+ an+PvP +Ll +i+k
  Phvul.001G031000.1 151 GPFTPSQWMELEHQALIYKYITANVPVPTHLLIPIRK 187
                         59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.0E-12151187IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.473152187IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.3E-16152186IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.847221265IPR014977WRC domain
PfamPF088791.2E-20222264IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MDLGVVGLEG LVGSDSSCAF GSSLASDPET KHKWYGSGVL KQERSGAASE DEWRTSKVPK  60
TDDNMSAASK AMLFHQRNSL LRSNVTLFSE GHNQPQMLSF SSPKSEPLLV DKASLNATLP  120
FSYHQLSSYS RNTGYSSGSI SMHGALSGMR GPFTPSQWME LEHQALIYKY ITANVPVPTH  180
LLIPIRKALD SAAFCNFSTG LLRPNTLGWG GFHLGFSNNT DPEPGRCRRT DGKKWRCSRD  240
AVVDQKYCER HMNRGRHRSR KPVEGQSGHA LTTTTTTTTT TTPPNASSNS IVVPGNNNNN  300
NTFAHNNVHH PLPSHSSSAN TINRMFMSNK ENNNNASERM QDGPALPMVP PTLELKPKDP  360
FMIHKHQLPY DESSSRNNNE FGLVTSDSLL NPSQKRSFGS SSSQKDDSES QQQHHPLRHF  420
IDDSPKPQSH HHHHRSSVWP ELDNMQSDRT QLSISIPISS SDFMSFATSS PSNEKLTLSP  480
LRLSRELDPI QMGLGVGSGA PNESNTRQAN WIPITWESSM GGPLGEVLNL SSSNNNSNGS  540
DHCGKNTSAL NLMKDGWDNS PPLGSSPNGV LQKTAFGSLS NSSAGSSPRA DNNNNKESAS  600
ATTLCNAL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G031000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160951.10.0hypothetical protein PHAVU_001G031000g
TrEMBLV7CUI30.0V7CUI3_PHAVU; Uncharacterized protein
STRINGXP_007160951.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.13e-97growth-regulating factor 1