PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.001G023200.2 | ||||||||
Common Name | PHAVU_001G023200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | bHLH | ||||||||
Protein Properties | Length: 288aa MW: 31933.9 Da PI: 8.5358 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.8 | 3e-16 | 118 | 164 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L++l+P++ K +Ka++L +A+eY+k+Lq Phvul.001G023200.2 118 FHNLSEKRRRSRINEKMKALQKLIPNS-----NKTDKASMLDEAIEYLKQLQ 164 5*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 5.7E-20 | 111 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-20 | 111 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.885 | 114 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.61E-18 | 117 | 168 | No hit | No description |
Pfam | PF00010 | 1.1E-13 | 118 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.5E-18 | 120 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MAGDMHQPQP SLARTFPPNS EDFSTFFNQL LHNPPPLGMD PNHSASDFTP HTNTNNPLPS 60 SPSTFHFSHP IPVTHATTFK QHNNNHNPDF TSSAESVEAR KPVPPPRSSS KRSRAAEFHN 120 LSEKRRRSRI NEKMKALQKL IPNSNKTDKA SMLDEAIEYL KQLQLQVQML MMRNGFSLHP 180 MSLPGEQRPM IMPQTGLNLD ESDGLQNSTS AIASSSKEEN LIRHAFSFPK QCSISDQSVV 240 VPSVTRLATS NAPSTFHPSI KDTLYDSMPQ LFMDAPKIGK DPSPDLS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.001G023200.2 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 1e-115 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007160865.1 | 0.0 | hypothetical protein PHAVU_001G023200g | ||||
TrEMBL | V7CRW0 | 0.0 | V7CRW0_PHAVU; Uncharacterized protein | ||||
STRING | XP_007160864.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 4e-28 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.001G023200.2 |
Entrez Gene | 18640144 |