PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G018300.1
Common NamePHAVU_001G018300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family G2-like
Protein Properties Length: 309aa    MW: 34109.4 Da    PI: 8.4102
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G018300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.26.6e-32132185255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Phvul.001G018300.1 132 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 185
                         9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.65E-15129186IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-28130186IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-23132185IPR006447Myb domain, plants
PfamPF002491.9E-7133184IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MFTNSHTLMQ TLLSEPDLSL NISPPSVSDI CEVKELGGFS KAIHNDMCST SDSGSSGGSD  60
LSHEFHNLGH HREPSLKLGF GTADLNPRRQ VQGDTRSFNH HHHHHLQPHI YGRDFKRTAR  120
VVNGVKRSVR APRMRWTTTL HAHFVHAVQL LGGHERATPK SVLELMNVKD LTLAHVKSHL  180
QMYRTVKSTD KGSTGHDIGL LNPRPGINIL HLHAPSPNLP HPIQTSHRTQ IETKTNNSRQ  240
DAEMGLTCSD LKGSESMVNN GLSYGVGGLD STTLSLSEGM LDLEFSLGRP IWQKDHPESS  300
REITLLKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-16133187458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-16133187458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-16133187357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-16133187357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-16133187357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-16133187357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-16133187458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-16133187458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-16133187458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-16133187458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-16133187458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-16133187458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:19054366, ECO:0000269|PubMed:20444210}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G018300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-109AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160807.10.0hypothetical protein PHAVU_001G018300g
SwissprotQ9FJV56e-55KAN4_ARATH; Probable transcription factor KAN4
TrEMBLV7CV730.0V7CV73_PHAVU; Uncharacterized protein
STRINGXP_007160807.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44633358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.11e-55G2-like family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA
    Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS.
    Plant Physiol., 2016. 172(4): p. 2403-2415
    [PMID:27794102]