PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G011000.2
Common NamePHAVU_001G011000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TALE
Protein Properties Length: 638aa    MW: 70612.8 Da    PI: 5.9169
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G011000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.2e-094014381954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +e+  LA+++gLt +qV +WF N R +
  Phvul.001G011000.2 401 FEHflHPYPKDSEKIMLARQTGLTRNQVANWFINARVR 438
                         665559******************************88 PP
2BELL1261.5e-40272343172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         erq+l  kk+kLls+l+eVdkrY+qy++q+q+v+ssF++vag+g+a+pYt+lAl++iSrhFrcL+dai++qi
  Phvul.001G011000.2 272 ERQNLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVAGVGAAEPYTALALRTISRHFRCLRDAISGQI 343
                         6899999****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.6E-62191341IPR006563POX domain
PfamPF075262.0E-50197340IPR006563POX domain
PROSITE profilePS5007112.39379442IPR001356Homeobox domain
SMARTSM003892.5E-9382446IPR001356Homeobox domain
CDDcd000862.24E-12382443No hitNo description
SuperFamilySSF466892.65E-17383449IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-28385448IPR009057Homeodomain-like
PfamPF059203.1E-17399438IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MYSDQAFSSG SYADMLSGNP LLPHKYSETV GGHNELKFIS SMRDTMTVQP IDEHSNAAPT  60
ADQDSFTNAG DSHSHLVPRT TQLGLVNSEQ NVQNQGLSLS LGSVMPSIAS VPTFPYQYPG  120
AGFSSLMTAS VPNLRGPSSL KDDEASLQRE LRNAECMASL ASCGFHKREG LLYTPQHPSM  180
CLSEGQSDGS LGFSSNVLNS QYLKAAQELL DEIVNVRKAL KQTGLEKQQS FRDIGLDGSK  240
DSDGKSTSQS GQISSCPNSS AANTSCELSP AERQNLLDKK TKLLSMLDEV DKRYRQYCHQ  300
MQIVVSSFDM VAGVGAAEPY TALALRTISR HFRCLRDAIS GQIQVTQRSL GEQEGIPRLR  360
YVDQQLRQQK ALQQLGVMRQ AWRPQRGLPE TSVSILRAWL FEHFLHPYPK DSEKIMLARQ  420
TGLTRNQVAN WFINARVRLW KPMVEEMYKE EFGDSEISSN LLPSENTLKA PRDDVQSSDS  480
KREESQDNII TVDDSVIQHH GLKLDHASEL DRGIQSSDHG ENAMDPRIGK LQGDQRFNIN  540
NSNSPYYGEG CIIAPTPATY DLSELGNIGV GGQVSLALEL RNYESEGFGV SNDEMHRRCK  600
KTLASSPEAD LLDYHFTDQG KQQNKFGNPH LLHEFVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-16388445158Homeobox protein Meis1
4xrs_B1e-16388445158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G011000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160715.10.0hypothetical protein PHAVU_001G011000g
RefseqXP_007160716.10.0hypothetical protein PHAVU_001G011000g
SwissprotQ9FWS91e-111BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBLV7CRH30.0V7CRH3_PHAVU; Uncharacterized protein
STRINGXP_007160715.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-103BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]