PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G010400.1
Common NamePHAVU_001G010400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 266aa    MW: 29057.1 Da    PI: 4.667
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G010400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.37.1e-173988255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         +kGVr++  +g+WvAeIr+p   + r +r +lg+f t  eAa a++ a++kl+g
  Phvul.001G010400.1 39 TFKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFETSLEAAMAYDGAARKLYG 88
                        69****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.64E-293898No hitNo description
SuperFamilySSF541711.57E-193996IPR016177DNA-binding domain
PROSITE profilePS5103221.433996IPR001471AP2/ERF domain
SMARTSM003804.3E-3239102IPR001471AP2/ERF domain
PRINTSPR003679.0E-94051IPR001471AP2/ERF domain
PfamPF008478.4E-124088IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-294097IPR001471AP2/ERF domain
PRINTSPR003679.0E-96278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MLKSGMGMNA SKQVKKAAKA SSRKGCMRGK GGPENATCTF KGVRQRTWGK WVAEIREPNR  60
GARLWLGTFE TSLEAAMAYD GAARKLYGSD AKLNLPELPL LFNFQFPPPN PSLNPQIPHM  120
PPPPQPQNPQ IPLFYDIFNL SPSDFINTLS NNTNIITNPV VSPPPQHAIA DSAPVYTSDS  180
LVAIPSESTT TTMEIYPSSN PVEINKVDPL LSFNDTPDPM FDESIWAEAI SLDLPLIPEA  240
AGIYEAETFL EVGPWDSLLP TPWCM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-184096663ATERF1
3gcc_A6e-184096663ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G010400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160709.10.0hypothetical protein PHAVU_001G010400g
TrEMBLV7CTL80.0V7CTL8_PHAVU; Uncharacterized protein
STRINGXP_007160709.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.13e-40ERF family protein