PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.001G009800.1

Common Name

PHAVU_001G009800g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

SRS

Protein Properties

Length: 334aa MW: 36016.5 Da PI: 7.7038

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.001G009800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	223	6.1e-69	121	272	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkq..salsstk 90 g+++CqdCGnqakkdC+h RCRtCCksrgf+C+thvkstWvpaakrrerqqqla+++++++ + + ++skr+re+ + ++ +l+++ Phvul.001G009800.1 121 GGGMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLATLQQQNQPPQfRGDHSKRHRESIEGAAagGSLACAP 211 5789*************************************************998877655559999999999955544005566666 PP DUF702 91 lssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 l+ + ++ le+ ++P+e++s+avfrcv+vs++d +e +aYqtav+igGhvfkGiLydqG++ Phvul.001G009800.1 212 LPIT--TTGLEVGQFPPELNSPAVFRCVKVSAMDAPDERYAYQTAVNIGGHVFKGILYDQGMD 272 6655..5679999**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.8E-65	123	272	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.2E-26	125	167	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.1E-24	223	271	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009299	Biological Process	mRNA transcription
GO:0048467	Biological Process	gynoecium development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MAGFFSLGGR HNKAEQEEDQ REDNNTNNTN HNNSQFLFRN VNEEIYNTNK GFEIWPQSSY 60 HHNFTNYYSF GVGPSRRNNA NTNNSSSNNV NDDVSVSFSD DSNRFGFTVM RSAGGVGGGG 120 GGGMNCQDCG NQAKKDCSHL RCRTCCKSRG FQCQTHVKST WVPAAKRRER QQQLATLQQQ 180 NQPPQFRGDH SKRHRESIEG AAAGGSLACA PLPITTTGLE VGQFPPELNS PAVFRCVKVS 240 AMDAPDERYA YQTAVNIGGH VFKGILYDQG MDGPYASAGC EGSSGGGGEA RALTLMAATT 300 TATTAGNPFD ASLYTAPMNA FMAGTQFFPP PRS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:20706774}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00152	DAP	Transfer from AT1G19790	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.001G009800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	1e-162	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007160701.1	0.0	hypothetical protein PHAVU_001G009800g
Swissprot	Q9FXH7	7e-83	SRS7_ARATH; Protein SHI RELATED SEQUENCE 7
Swissprot	Q9LQZ5	8e-83	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	V7CTW6	0.0	V7CTW6_PHAVU; Uncharacterized protein
STRING	XP_007160701.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	7e-74	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	Phvul.001G009800.1
Entrez Gene	18640008

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]