PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J776500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 261aa MW: 27614.8 Da PI: 5.2551 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.2 | 3.4e-09 | 163 | 187 | 7 | 31 |
HHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 7 erErrRRdriNsafeeLrellPkas 31 ++ErrRR+r+N++++ Lr+++Pk Pavir.J776500.1.p 163 MAERRRRKRLNDRLSMLRSIVPKTQ 187 79*********************52 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.35E-6 | 160 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-6 | 163 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.6E-7 | 163 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MELDEETFLD ELMSLRREAA PWQGYPGGVM MSDLLFYGAD ARSGGGMDLP PFQELVPMPP 60 AAPPHEEFNF DCLSEVCNPY RSSGVAAPGE AAPGQTLDAP LHDAMVDEEP SGDKGQCYGG 120 GGSSPTFVFG GGAGESSEMA PIRGVGGPHH KTKLHGAPSK NLMAERRRRK RLNDRLSMLR 180 SIVPKTQQGE EGVGLGEEAV VPRTGETAPR AETEDGREGG EGREGEKPRR LRPAGRPYAG 240 GGGMAGGGGQ RRKRRLADTM * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 164 | 171 | ERRRRKRL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.2542 | 0.0 | root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J776500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025796859.1 | 8e-99 | transcription factor bHLH61-like | ||||
TrEMBL | A0A3L6SBZ8 | 4e-98 | A0A3L6SBZ8_PANMI; Transcription factor bHLH61-like | ||||
STRING | Pavir.Ib00206.1.p | 1e-123 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1302 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10570.1 | 7e-09 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J776500.1.p |