PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J766000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 465aa    MW: 50139.2 Da    PI: 7.2317
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J766000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.3e-17145191148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg WT+ Ed +l ++v + G++ W++Ia+ ++ gR +kqc++rw+++l
  Pavir.J766000.1.p 145 RGLWTPNEDSKLRELVSKIGKKKWSKIAKNLP-GRIGKQCRERWFNHL 191
                        788*****************************.*************97 PP
2Myb_DNA-binding46.49.4e-15199240245
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +WT+eEd+ lv  +++lG+  W++ a++++ gR ++++k+rw+
  Pavir.J766000.1.p 199 TAWTEEEDQMLVAWHRKLGKS-WAKMAKHVP-GRPENSLKNRWH 240
                        68*****************88.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.345140195IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-22142198IPR009057Homeodomain-like
SuperFamilySSF466891.7E-28142239IPR009057Homeodomain-like
SMARTSM007171.3E-15144193IPR001005SANT/Myb domain
PfamPF002492.9E-16145191IPR001005SANT/Myb domain
CDDcd001672.25E-14148191No hitNo description
PROSITE profilePS5129418.561196247IPR017930Myb domain
SMARTSM007174.6E-13197245IPR001005SANT/Myb domain
PfamPF002494.5E-13198240IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-16199243IPR009057Homeodomain-like
CDDcd001671.14E-11200243No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MAFRFGERSM FREPPPAERT TPSTKIRATS QSLLQELITG TLPIPDLCIP DENQGGDMYG  60
TSPYPLIAVG DVHLGGSNHI PRDGMVPQHD ATRFMGAGDL DYGNTICGNQ ALMENTIPSE  120
SSVATIDTAV SQAYAKEDAP TNKGRGLWTP NEDSKLRELV SKIGKKKWSK IAKNLPGRIG  180
KQCRERWFNH LKPGTKKKTA WTEEEDQMLV AWHRKLGKSW AKMAKHVPGR PENSLKNRWH  240
ATWRHVRKNR DTIEMAVKDG THPNVLVVYM VRECGALKAG AGAPGRARAA DPPVPDSWQA  300
PTHDNPAAAE PSPVSNSPDQ WWLPMLGAGM LPPPITETPA ALPDHNDVES CVYATHDADG  360
YVRYVHLQPT PGHGGDAPAN QIDAAAAEAA GYYNPLTFPY NSFAGQQVYA HTTYPAGSYG  420
QEAGPSYCYR NSGAGGDEAR GNAGSGSAAP ELAVAGMPFS ANSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-331452444102MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-331452444102C-Myb DNA-Binding Domain
1msf_C2e-331452444102C-Myb DNA-Binding Domain
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J766000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806726.10.0uncharacterized protein LOC112885291
TrEMBLA0A3L6SXH60.0A0A3L6SXH6_PANMI; Uncharacterized protein
STRINGPavir.J19808.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2759645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-28myb domain protein 98