PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J746700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 184aa    MW: 20260.4 Da    PI: 7.8854
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J746700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.39.9e-15115159347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE+ l++++ +++G g+W+ I+r   k+Rt+ q+ s+ qky
  Pavir.J746700.1.p 115 PWTEEEHRLFLEGLEKYGRGDWRNISRWSVKTRTPTQVASHAQKY 159
                        8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.222274IPR001005SANT/Myb domain
SuperFamilySSF466891.66E-112478IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-52472IPR009057Homeodomain-like
PROSITE profilePS500906.8532572IPR017877Myb-like domain
PROSITE profilePS5129420.291108164IPR017930Myb domain
SuperFamilySSF466892.21E-18110164IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-17112163IPR006447Myb domain, plants
SMARTSM007179.2E-11112162IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-11114158IPR009057Homeodomain-like
PfamPF002491.3E-11115159IPR001005SANT/Myb domain
CDDcd001671.08E-10115160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MAFYYGVSGQ SSSAAAAWAA PSSRPWTKAE DKVFEGALVT FPEHVPNRWT LVASWLPGRT  60
AQEAWDHYQA LLTDVDLIER GMVEAPDSWD EDAAAGGGRG RGGAGGGDER RRGVPWTEEE  120
HRLFLEGLEK YGRGDWRNIS RWSVKTRTPT QVASHAQKYF IRQASAGSRG DSKRKSIHDI  180
TTP*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J746700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9714051e-155EU971405.1 Zea mays clone 363908 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961933.12e-98transcription factor DIVARICATA
SwissprotQ8S9H74e-51DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A3L6T4N13e-99A0A3L6T4N1_PANMI; Transcription factor DIVARICATA-like
STRINGPavir.J08778.1.p1e-131(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28953687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-44Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]