PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J729400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bZIP | ||||||||
Protein Properties | Length: 180aa MW: 19651.2 Da PI: 10.0769 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 35.8 | 1.7e-11 | 83 | 127 | 5 | 49 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l Pavir.J729400.1.p 83 KRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQL 127 9***************************************99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.9E-7 | 79 | 160 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.668 | 81 | 131 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 6.83E-11 | 83 | 131 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.4E-11 | 83 | 130 | No hit | No description |
Pfam | PF00170 | 2.6E-10 | 83 | 127 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 3.35E-22 | 84 | 131 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MDIEKISSSG PSDRDRDRAA ETSSPPRPKH RHSSSVDGSG LYFSPGVGGG AGKDAAASLA 60 EVMEAKKAMS PEQLAELAAI DPKRAKRILA NRQSAARSKE RKARYITELE RKVQTLQTEA 120 TTLSAQLTLF QVHFHPSVIS WISGQVYVHA ISESGSFNSK VTIFLCHHFK KTWIYESIP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.4430 | 0.0 | callus| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at high levels in roots, low level in leaf sheath, but not in leaf blade. Predominantly expressed in vascular tissues. {ECO:0000269|PubMed:14704272}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J729400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT033210 | 1e-139 | BT033210.1 Zea mays full-length cDNA clone ZM_BFb0176L19 mRNA, complete cds. | |||
GenBank | BT063263 | 1e-139 | BT063263.1 Zea mays full-length cDNA clone ZM_BFc0045A20 mRNA, complete cds. | |||
GenBank | KJ727559 | 1e-139 | KJ727559.1 Zea mays clone pUT5419 bZIP transcription factor (bZIP124) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795608.1 | 2e-84 | transcription factor RF2b | ||||
Swissprot | Q6S4P4 | 9e-62 | RF2B_ORYSJ; Transcription factor RF2b | ||||
TrEMBL | A0A2S3IQU3 | 2e-84 | A0A2S3IQU3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J07252.1.p | 1e-130 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2683 | 36 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06850.2 | 3e-36 | basic leucine-zipper 52 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J729400.1.p |
Publications ? help Back to Top | |||
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