PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J702100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 183aa MW: 20302.9 Da PI: 10.0209 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 129.1 | 3.4e-40 | 21 | 154 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppG+r Pt+eel+ +yL+++++g++ ++e++i+ vdiy+++P++L++ +++ ++++w+fF++r++++ +g+r+ r+t sgyWkatg+ Pavir.J702100.1.p 21 LPPGYRLYPTEEELLGFYLRHRLAGTRPQVEHFIPVVDIYSHHPSELRAmagAANVgDKEQWFFFCPRAERELNGSRPARTTPSGYWKATGS 112 79****************************999**************85345223335669******************************* PP NAM 89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s+ +++ g k+t+ fy+grap+g+kt+W m+ey++ Pavir.J702100.1.p 113 PSYVYSAppASRVNGEKRTMDFYEGRAPTGTKTRWKMNEYKA 154 ******9999999***************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-42 | 18 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 41.976 | 21 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-20 | 22 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MLLKRGAMES SRSGSDHDPV LPPGYRLYPT EEELLGFYLR HRLAGTRPQV EHFIPVVDIY 60 SHHPSELRAM AGAANVGDKE QWFFFCPRAE RELNGSRPAR TTPSGYWKAT GSPSYVYSAP 120 PASRVNGEKR TMDFYEGRAP TGTKTRWKMN EYKAVAHRRR RGHPSGCGTS SACAACTPAT 180 AR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-29 | 21 | 162 | 17 | 150 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-29 | 21 | 162 | 17 | 150 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-29 | 21 | 162 | 17 | 150 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-29 | 21 | 162 | 17 | 150 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-29 | 15 | 162 | 10 | 153 | NAC domain-containing protein 19 |
3swm_B | 3e-29 | 15 | 162 | 10 | 153 | NAC domain-containing protein 19 |
3swm_C | 3e-29 | 15 | 162 | 10 | 153 | NAC domain-containing protein 19 |
3swm_D | 3e-29 | 15 | 162 | 10 | 153 | NAC domain-containing protein 19 |
3swp_A | 3e-29 | 15 | 162 | 10 | 153 | NAC domain-containing protein 19 |
3swp_B | 3e-29 | 15 | 162 | 10 | 153 | NAC domain-containing protein 19 |
3swp_C | 3e-29 | 15 | 162 | 10 | 153 | NAC domain-containing protein 19 |
3swp_D | 3e-29 | 15 | 162 | 10 | 153 | NAC domain-containing protein 19 |
4dul_A | 3e-29 | 21 | 162 | 17 | 150 | NAC domain-containing protein 19 |
4dul_B | 3e-29 | 21 | 162 | 17 | 150 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J702100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828029.1 | 2e-91 | NAC domain-containing protein 90-like isoform X2 | ||||
Swissprot | Q9M290 | 6e-49 | NAC61_ARATH; Putative NAC domain-containing protein 61 | ||||
TrEMBL | A0A3L6Q3I6 | 1e-91 | A0A3L6Q3I6_PANMI; NAC domain-containing protein 90-like | ||||
STRING | Pavir.J13106.1.p | 1e-122 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.1 | 2e-45 | NAC domain containing protein 61 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J702100.1.p |