PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J700100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 281aa    MW: 29413.1 Da    PI: 7.0108
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J700100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-12114160354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++h e Er+RR+++N +f eLr  +P+       +++Ka+ L  A +YI +L
  Pavir.J700100.1.p 114 ASHVESERQRREKLNRRFCELRAAVPTV-----SRMDKASLLADAARYIAEL 160
                        5899***********************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.669111160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-10114160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-16114179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-16115175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.26E-12115165No hitNo description
SMARTSM003531.5E-10117166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDEEHLSPSY SSRPAPLSFS EAASCTILEL PSFEVPEQWL LADAAAAGGN ENHDVGAYYL  60
GETPTPAPAG SVLSPADSEL SKLPLPSPSA PAPAPAKRRG RKPGPRPVAG TAAASHVESE  120
RQRREKLNRR FCELRAAVPT VSRMDKASLL ADAARYIAEL RARVARLEAD ARQHHAAVAR  180
WEPASAGGDA DAAAVGGELY VRKVGRDAAV VRVTSGARHA PAWLMGALRS LELQVQHACV  240
SCAHGVTTQD VLVNLPAGAA ALQDHDGLRG ALLQKLEDSG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-17115173866Transcription factor MYC2
5gnj_B9e-17115173866Transcription factor MYC2
5gnj_E9e-17115173866Transcription factor MYC2
5gnj_F9e-17115173866Transcription factor MYC2
5gnj_G9e-17115173866Transcription factor MYC2
5gnj_I9e-17115173866Transcription factor MYC2
5gnj_M9e-17115173866Transcription factor MYC2
5gnj_N9e-17115173866Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J700100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270124e-51KJ727012.1 Zea mays clone pUT3993 bHLH transcription factor (bHLH109) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801647.11e-138transcription factor MYC2-like
TrEMBLA0A3L6T7221e-143A0A3L6T722_PANMI; Uncharacterized protein
STRINGPavir.J01049.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.14e-21bHLH family protein