PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J693300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 144aa MW: 16580 Da PI: 8.9507 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 72.1 | 1.3e-22 | 45 | 132 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 f+ +Y+ + GF+vrk++++k+ +g+it+ +fvC keg+r+++k++ + ++ +raetrt+C+ +++k+++ ++ +v++l+leHnH l Pavir.J693300.1.p 45 FWLSYGGHKGFEVRKKYTNKRPSDGKITSCRFVCAKEGRRSQDKRD-HLTKCPRAETRTECQVYMNLKMDRkKEILKVSELVLEHNHGL 132 99*****************************************999.999*******************998999************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.2E-18 | 45 | 132 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MEEEANKQEA NNAHHDSTTT ILLGLVRLVP QVGMEFRTSD EAWAFWLSYG GHKGFEVRKK 60 YTNKRPSDGK ITSCRFVCAK EGRRSQDKRD HLTKCPRAET RTECQVYMNL KMDRKKEILK 120 VSELVLEHNH GLHLPETLHL MVS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J693300.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020151343.1 | 3e-67 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_020151344.1 | 3e-67 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A453SK48 | 7e-66 | A0A453SK48_AEGTS; Uncharacterized protein | ||||
STRING | BRADI2G59232.1 | 8e-56 | (Brachypodium distachyon) | ||||
STRING | OS10T0571900-00 | 5e-56 | (Oryza sativa) | ||||
STRING | Si032571m | 3e-56 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 4e-16 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J693300.1.p |