PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J677700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 235aa    MW: 25768.5 Da    PI: 5.2335
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J677700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.11.3e-1749102456
                        -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        +++ft+eq++ Le+ F+    ++  +e++eLA++l+L+ rqV +WFqN+Ra+++
  Pavir.J677700.1.p  49 KRRFTEEQVRSLETTFHArRAKLEPREKAELARELDLQPRQVAIWFQNKRARWR 102
                        458**************8899********************************9 PP
2HD-ZIP_I/II120.31e-3847140193
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                        e+krr+++eqv++LE++F++++ kLep++K+elareL+lqprqva+WFqn+RAR+++kqlE+dy+aL+++ydal+++ e+L++e+ +L++++
  Pavir.J677700.1.p  47 ERKRRFTEEQVRSLETTFHARRaKLEPREKAELARELDLQPRQVAIWFQNKRARWRSKQLEHDYAALRAQYDALHARVESLRQEKLALAAQV 138
                        69*****************9999******************************************************************999 PP

        HD-ZIP_I/II  92 ke 93 
                        +e
  Pavir.J677700.1.p 139 DE 140
                        76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.26E-1738106IPR009057Homeodomain-like
PROSITE profilePS5007116.98943104IPR001356Homeobox domain
SMARTSM003894.4E-1646108IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.9E-1849111IPR009057Homeodomain-like
PfamPF000465.2E-1549102IPR001356Homeobox domain
CDDcd000866.90E-1552105No hitNo description
PROSITE patternPS00027079102IPR017970Homeobox, conserved site
PfamPF021833.5E-16104145IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MERECQLVVA PPRPRHGQYE EGPFAHQVMV AGDIDPAGAG RGGGGGERKR RFTEEQVRSL  60
ETTFHARRAK LEPREKAELA RELDLQPRQV AIWFQNKRAR WRSKQLEHDY AALRAQYDAL  120
HARVESLRQE KLALAAQVDE LKGRLSGRQD QASGSSCEVN GGAEAADDRR NSASCVAEDD  180
GAVTPAVAAS EESAAAAAEY CYDHAAYGGG LPEPFCTTPE LWDTWPLLEW NAVA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J677700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816119.11e-124homeobox-leucine zipper protein HOX24-like
SwissprotA2X7U17e-86HOX24_ORYSI; Homeobox-leucine zipper protein HOX24
TrEMBLA0A3L6RVE91e-129A0A3L6RVE9_PANMI; Homeobox-leucine zipper protein HOX24-like
STRINGPavir.J39801.1.p1e-170(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.15e-31homeobox 7