PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J675700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TCP
Protein Properties Length: 451aa    MW: 46782 Da    PI: 7.2102
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J675700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.55.9e-35911902106
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssaseceaess 78 
                        +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l  +                ++          
  Pavir.J675700.1.p  91 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDKLEVLpawqptaaaananaaAAP---------- 172
                        79**************************************************************554443333322222111.......... PP

                TCP  79 sssasnsssgkaaksaakskksqksaas 106
                                   ++++++ s ++++++a+
  Pavir.J675700.1.p 173 ----------PSSSTHPDSADNSDDKAQ 190
                        ..........222222222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.3E-3191178IPR005333Transcription factor, TCP
PROSITE profilePS5136933.25793151IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MGDAGQSHHH HHHGFQPQLL SFGGGGGAQH HVHQFAAQAQ APSAASHSRS RGGAAAGGEI  60
VAATSASHSR VRGSGGGEIV AVQGGHIVRS TGRKDRHSKV CTARGPRDRR VRLSAHTAIQ  120
FYDVQDRLGY DRPSKAVDWL IKNAKDAIDK LEVLPAWQPT AAAANANAAA APPSSSTHPD  180
SADNSDDKAQ AITVAHTSFD FPGARGASGG GASGTGFLPP SLDSDSIADT IKSFFPMAGT  240
AGGEASSSTA AAQSSAMGGF QSYTHDLLSR TGSHSQELRL SLQPLPDPMF HQQQDRSHAY  300
GGNGSAQQAL FPGYSFGGGA MWAAEQAQGQ RMLPWNVPDP GGGSTTGGYL FNVSQQAALA  360
GQSQFFFQRG PLQSSNLPSD RGWPETVEAD NPMQQQQHQH QGGLSPAVFA PGIGFSGFRI  420
PTRIQGDEEH NDGGNGDKPP PPSVSSASHH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2098151154Putative transcription factor PCF6
5zkt_B1e-2098151154Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.172910.0stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J675700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9557080.0EU955708.1 Zea mays clone 1543050 mutant cincinnata mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819000.10.0transcription factor PCF5-like
RefseqXP_025819001.10.0transcription factor PCF5-like
SwissprotQ8LT071e-177PCF5_ORYSJ; Transcription factor PCF5
TrEMBLA0A2S3HYW50.0A0A2S3HYW5_9POAL; Uncharacterized protein
TrEMBLA0A2T7DST40.0A0A2T7DST4_9POAL; Uncharacterized protein
TrEMBLA0A3L6R0N00.0A0A3L6R0N0_PANMI; Uncharacterized protein
STRINGPavir.J24681.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.38e-65TCP family protein