PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J655400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family E2F/DP
Protein Properties Length: 314aa    MW: 33650.4 Da    PI: 8.2292
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J655400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP80.31.7e-25196261171
            E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                        r+++sL llt+kf++ll+ +e+g+++ln++a++L   +v  ++RRiYDi+NVLe+++liek  kn irwkg
  Pavir.J655400.1.p 196 RYDSSLSLLTKKFINLLQGAENGTLDLNKAAESL---EV--QKRRIYDITNVLEGVDLIEKGLKNMIRWKG 261
                        6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-27193262IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.6E-32196261IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.99E-16196259IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.6E-23198261IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDGGSSSLPL PHPPQVYLRR PVPPPGPPVT APPRVHLFRP PVPIPIFSSR PRAAARPPIP  60
PAAAPAPTPQ VAAAPAPPRP PPAAPTSTSA ADKQPPPPGQ PQAGLMLPPP APKAAGKGTP  120
MPNPQPNEQH NGGENSQAEI NMGETAQDKE TISEPVKVMQ RVKKLKVSKH SMGASDGSGA  180
VEGDAGPSLH SINHCRYDSS LSLLTKKFIN LLQGAENGTL DLNKAAESLE VQKRRIYDIT  240
NVLEGVDLIE KGLKNMIRWK GFDISKPKEV ECQISSLKEE LESLYDEEVR LDDEIREAKE  300
KLQALTLDED KRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A3e-21196261773PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J655400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0647371e-141BT064737.1 Zea mays full-length cDNA clone ZM_BFb0090H09 mRNA, complete cds.
GenBankKJ7268781e-141KJ726878.1 Zea mays clone pUT3419 E2F-DP transcription factor (E2F5) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975004.11e-139transcription factor E2FC
TrEMBLA0A3L6Q6V51e-159A0A3L6Q6V5_PANMI; Transcription factor E2FC-like
STRINGPavir.J35270.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.31e-49E2F transcription factor 1