PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J649800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 446aa    MW: 49937.9 Da    PI: 8.3376
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J649800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.95.2e-91574322373
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        + lL++cA+av++   + a++lL +++++asp+gd++qRla++++eAL+arla+++s+  + +++ +t+    +e l+a+++f  ++ + k+
  Pavir.J649800.1.p  57 RALLVHCAQAVDD--RRGARELLRQVRQHASPTGDATQRLAHCLAEALEARLAGTGSGSRSLMATPTTN---RAEFLKAYRIFMATCCFEKV 143
                        789******9975..899************************************777777666666665...9******************* PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                        +++ aN +I +a++g  r+H++D+++  G+QWp Ll+ La+R++gpp++ iT ++ p++g   + ++eetg+ L+++A+ +gvpf+f++++a
  Pavir.J649800.1.p 144 AFMFANLTICRAAAGRARLHVVDYGLHLGFQWPGLLRWLAARDGGPPEVTITFIDLPQPGfrPAGRIEETGRSLSNYARDIGVPFKFRAIAA 235
                        ***********************************************************999****************************99 PP

               GRAS 184 krledleleeLrvkp.....gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                         r++++  eeL +       g +++Vn+ ++l++l d+sv ++   +rd+vL  +++++P v+++      h ++sF +rf eal yysa+f
  Pavir.J649800.1.p 236 ARWDAIGAEELGLGVavddpGAVVVVNSLFKLETLADDSVVVDCpsPRDRVLGGIRGMRPAVFTHGVVHGFH-GSSFPTRFREALFYYSAVF 326
                        9**********65444445799****************98665444*******************9999988.779**************** PP

               GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv 359
                        d l+a++pr se r+++Er +lg+ + nv+aceg++r+ r  ++++W+ r ++aG++ +pl+ +++ +++  +rk+   + + + e++g+l+
  Pavir.J649800.1.p 327 DVLDATMPRGSELRRVLERDVLGPCALNVIACEGRDRTDRFDSYKQWQLRSRRAGLRLLPLDREVVGEVRDDVRKHRyHRDFVISEDHGWLL 418
                        ****************************************************************************99999*********** PP

               GRAS 360 lgWkdrpLvsvSaW 373
                        +gWk+r L++   W
  Pavir.J649800.1.p 419 QGWKGRVLYAHANW 432
                        **********9999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512317.8241750IPR014767Diaphanous autoregulatory (DAD) domain
PROSITE profilePS5098551.9130412IPR005202Transcription factor GRAS
PfamPF035141.8E-8857432IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MAAPADEMIA RMMASDCELS EEEMEDLRAA MADEAATRDV WRRRRRRRKQ QQAVDMRALL  60
VHCAQAVDDR RGARELLRQV RQHASPTGDA TQRLAHCLAE ALEARLAGTG SGSRSLMATP  120
TTNRAEFLKA YRIFMATCCF EKVAFMFANL TICRAAAGRA RLHVVDYGLH LGFQWPGLLR  180
WLAARDGGPP EVTITFIDLP QPGFRPAGRI EETGRSLSNY ARDIGVPFKF RAIAAARWDA  240
IGAEELGLGV AVDDPGAVVV VNSLFKLETL ADDSVVVDCP SPRDRVLGGI RGMRPAVFTH  300
GVVHGFHGSS FPTRFREALF YYSAVFDVLD ATMPRGSELR RVLERDVLGP CALNVIACEG  360
RDRTDRFDSY KQWQLRSRRA GLRLLPLDRE VVGEVRDDVR KHRYHRDFVI SEDHGWLLQG  420
WKGRVLYAHA NWVADDDDHT LTSRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-35454337378Protein SCARECROW
5b3h_D5e-35454337378Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13746RDVWRRRRRR
24147RRRRRRR
34248RRRRRRK
44249RRRRRRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J649800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827775.10.0scarecrow-like protein 34
TrEMBLA0A2T8IAD20.0A0A2T8IAD2_9POAL; Uncharacterized protein
STRINGPavir.J23608.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23131297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-103SCARECROW-like 14