PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J636000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 423aa MW: 44762.6 Da PI: 6.0673 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.6 | 1.9e-12 | 228 | 272 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + ErrRR+r+N++f++Lr llP+ K +Ka++L ++eY+++L Pavir.J636000.1.p 228 HMISERRRRERLNESFQTLRALLPPG-----SKKDKATVLANTTEYMHKL 272 8899********************95.....599************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.605 | 223 | 272 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.15E-16 | 225 | 293 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.1E-16 | 227 | 290 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.1E-10 | 228 | 272 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.1E-12 | 229 | 278 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.38E-5 | 238 | 272 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MGCERGEIEV GLSDTEAAAV AGHVQQSLME ELMQLAPAAV PSSSPSSLPS LSIGSPEYSS 60 LLIRSMAAAA EPSSSQEWQP LLHPAAVQLP GLLPPAYGPP QFLGSEAEDA AIAEAMLAVI 120 SSSAPLPPPA AFTDAPPWLV LHRAQRWSPR RRAGAFRAYS AALSPRARPR PGAPGQRMAK 180 TAIALMLSVH VAMRDRELAA ARQQEDAAAA QPPPAPPPPQ HTSSQLHHMI SERRRRERLN 240 ESFQTLRALL PPGSKKDKAT VLANTTEYMH KLIADVSDLE KRNRQLEAQL GLPLETQQAW 300 SGDDSSERVQ VDVTAGASTS AAGGQAQVVS IRVTVRAECD LSEVVIAMLA GIKETGRFAV 360 VTVDARQRSN GHAQVGITLR VEPGGGDDEP DETTLKEAVA KAVEDAVARP PSPSPPPPQW 420 SP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 231 | 236 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J636000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812545.1 | 0.0 | putative transcription factor bHLH041 isoform X1 | ||||
TrEMBL | A0A3L6PIY5 | 0.0 | A0A3L6PIY5_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J30600.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3977 | 33 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 3e-18 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J636000.1.p |