PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J617500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 468aa    MW: 50054.8 Da    PI: 5.7164
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J617500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.7e-16137183148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg W++ Ed +l ++v + G + W++Ia+ ++ gR +kqc++rw ++l
  Pavir.J617500.1.p 137 RGLWSPNEDSKLRELVSKIGVKKWSKIAKDLP-GRIGKQCRERWMNHL 183
                        788*****************************.*************96 PP
2Myb_DNA-binding38.82.2e-12191231345
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        +WT+eE + l+  +++ G+g W++ a++++ gR ++++k+rw+
  Pavir.J617500.1.p 191 AWTEEEYQMLITWHRKVGTG-WAKMAKHIP-GRPENSLKNRWN 231
                        7*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.15131187IPR017930Myb domain
SMARTSM007173.8E-15136185IPR001005SANT/Myb domain
SuperFamilySSF466893.63E-27137230IPR009057Homeodomain-like
PfamPF002493.7E-15137183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-26138190IPR009057Homeodomain-like
CDDcd001676.66E-14140183No hitNo description
PROSITE profilePS5129411.575188238IPR017930Myb domain
SMARTSM007171.2E-8188236IPR001005SANT/Myb domain
PfamPF002491.5E-11191231IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-16191234IPR009057Homeodomain-like
CDDcd001677.21E-10191234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MDRSMFREPA AMERTTPSTR IGATSWSLVQ ELIAGTLPTP DLYIPDENRG GDMYGTSPYP  60
LIAAGAVHPG GSNHAPRDGK VPHHDATGFM GAGDLDYGNA ICGNRALMEN TIPYESSLVT  120
IASQAYAEVD APTYNERGLW SPNEDSKLRE LVSKIGVKKW SKIAKDLPGR IGKQCRERWM  180
NHLKPGIKET AWTEEEYQML ITWHRKVGTG WAKMAKHIPG RPENSLKNRW NATWRHVKKN  240
KETIEMAVND GTHPNALVVY MVRECGALTE GAGAPARAAD PPVPDAVPDG WQVDNNPAAT  300
EPSPGSNSPD QWWLPMLCGG GTLPPPIMEA PAPLPDHNNV ESCVYATYDT DGYMRYVHLQ  360
PTPGHDGDAP ANQVVAAAAE APGYYNPLTF PYNPLAGQQV YAHTTYPAAA GSYGQEAVPS  420
YCYSNSGGGG DEAHGNAGSG SAAPELAGMP FSANAPAAQN QRGGGAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-331372354102MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-331372354102C-Myb DNA-Binding Domain
1msf_C2e-331372354102C-Myb DNA-Binding Domain
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J617500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806726.10.0uncharacterized protein LOC112885291
TrEMBLA0A3L6SXH60.0A0A3L6SXH6_PANMI; Uncharacterized protein
STRINGPavir.J19808.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2759645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.15e-36myb domain protein 98