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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pavir.J611700.1.p |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
GRAS |
| Protein Properties |
Length: 402aa MW: 45479.4 Da PI: 9.3393 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.J611700.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 325.5 | 1.1e-99 | 16 | 397 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.....ppsetseknsseelaalklfsev 87
l++lL++cAeavs+g+ a++lL ++++++sp+gd+ qRla++f+++L+ rla+++++ +al +p + ++ +++ l+a++l+++v
Pavir.J611700.1.p 16 LRTLLIHCAEAVSAGNRLGATELLRQIKKRSSPTGDAWQRLAHCFAKGLELRLAGTGTGKQHALlmgmaKPPKRTSAEEALDLKAYHLYVQV 107
6789**************************************************98777666653221133333333477788999****** PP
GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfe 177
+ ++ ++ +aI +a++g ++vHi+D++ +G+QWp Ll aLa R++gpp++RiT+++ p++g + + +etg+r ++fA++ gvpf+
Pavir.J611700.1.p 108 CSFHMAAFKFSQSAIWKATAGRKKVHIVDYGEHHGFQWPLLLYALAHREGGPPEVRITTIVYPQPGfrPAAQSQETGRRFTDFARQRGVPFK 199
*****************************************************************9999*********************** PP
GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
f+v+va r+e++ ++L+++p+E+l+Vn ++ rl+de v++es +rd vL +++++P+v++++ ++++++++ F+ rf eal yysa+
Pavir.J611700.1.p 200 FRVIVAARWETVCADDLDIQPDEVLVVNGLFHFGRLMDEGVDVESpsPRDVVLANIRNMRPDVFILCIENSSYGAPFFVLRFREALFYYSAM 291
***************************************999999889******************************************** PP
GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
fd+++a+ pr+s er++vE+ellgr + n++aceg+er+er et+++W+ r +aG++++pl+ +++k + +++ + + + ++ ++++l+
Pavir.J611700.1.p 292 FDMMDATTPRDSAERMVVEQELLGRCALNAIACEGSERVERPETYKQWQVRCCRAGLRQLPLNPSTVKYLSDKVKNGYHKDFVIHVDQKWLL 383
***************************************************************************999888*********** PP
GRAS 360 lgWkdrpLvsvSaW 373
+g k+r L+++S W
Pavir.J611700.1.p 384 QGCKGRILYAMSTW 397
************** PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 402 aa
Download sequence Send
to blast |
MERQRRRRSG NEAVDLRTLL IHCAEAVSAG NRLGATELLR QIKKRSSPTG DAWQRLAHCF 60
AKGLELRLAG TGTGKQHALL MGMAKPPKRT SAEEALDLKA YHLYVQVCSF HMAAFKFSQS 120
AIWKATAGRK KVHIVDYGEH HGFQWPLLLY ALAHREGGPP EVRITTIVYP QPGFRPAAQS 180
QETGRRFTDF ARQRGVPFKF RVIVAARWET VCADDLDIQP DEVLVVNGLF HFGRLMDEGV 240
DVESPSPRDV VLANIRNMRP DVFILCIENS SYGAPFFVLR FREALFYYSA MFDMMDATTP 300
RDSAERMVVE QELLGRCALN AIACEGSERV ERPETYKQWQ VRCCRAGLRQ LPLNPSTVKY 360
LSDKVKNGYH KDFVIHVDQK WLLQGCKGRI LYAMSTWAAD S*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5b3g_B | 4e-38 | 18 | 348 | 89 | 421 | Protein SHORT-ROOT |
| 5b3h_B | 1e-38 | 18 | 348 | 35 | 367 | Protein SHORT-ROOT |
| 5b3h_E | 1e-38 | 18 | 348 | 35 | 367 | Protein SHORT-ROOT |
| 5hyz_A | 8e-39 | 20 | 397 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
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