PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J610400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 275aa MW: 30825.5 Da PI: 9.9187 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.6 | 1.2e-31 | 50 | 100 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+ Pavir.J610400.1.p 50 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 100 79***********************************************95 PP | |||||||
2 | K-box | 97.3 | 2.3e-32 | 117 | 215 | 3 | 100 |
K-box 3 kssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 +ss s ++e + ++++qe+a+L+++i nLq+++R l+G++++++s+k+L+qLe +L+k+l kiR++Kne+l +++e++q++e elq++n + Pavir.J610400.1.p 117 NSSAAStVAEVTIQHYKQESARLRQQITNLQNSNRTLVGDSISTMSHKDLKQLEARLDKGLVKIRARKNEVLSSELEYMQRREMELQNDNLY 208 455555699999******************************************************************************** PP K-box 94 Lrkklee 100 Lr++++e Pavir.J610400.1.p 209 LRSRVDE 215 **99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.7E-40 | 42 | 101 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.221 | 42 | 102 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.77E-44 | 43 | 116 | No hit | No description |
SuperFamily | SSF55455 | 2.88E-33 | 43 | 116 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 44 | 98 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-33 | 44 | 64 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-26 | 51 | 98 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-33 | 64 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-33 | 79 | 100 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.6E-24 | 129 | 213 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.261 | 129 | 219 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
WGFSGQSTLT STTGPKLKEP AVSSPGSGSV GAAAAAAAAE KNGRGKIEIK RIENTTNRQV 60 TFCKRRNGLL KKAYELSVLC DAEVALIVFS SRGRLYEYSN NSVKATIERY KKATSDNSSA 120 ASTVAEVTIQ HYKQESARLR QQITNLQNSN RTLVGDSIST MSHKDLKQLE ARLDKGLVKI 180 RARKNEVLSS ELEYMQRREM ELQNDNLYLR SRVDENERAQ QTANMMGESS TSEYQQGFIP 240 YDPIRSFLQF NITQQQPQFY SQQEDRKDFN LGGR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 5e-21 | 43 | 130 | 2 | 89 | MEF2 CHIMERA |
6bz1_B | 5e-21 | 43 | 130 | 2 | 89 | MEF2 CHIMERA |
6bz1_C | 5e-21 | 43 | 130 | 2 | 89 | MEF2 CHIMERA |
6bz1_D | 5e-21 | 43 | 130 | 2 | 89 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.42035 | 0.0 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in lodicules, stamens, carpels and ovules during their development. {ECO:0000269|PubMed:16326928}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the lodicule, stamen carpel and ovule primordia. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. Acts as a C-class protein in association with MADS3. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3), floral meristem determinacy and regulation of the carpel morphogenesis (whorl 4). Plays a more predominant role in floral meristem determinacy than MADS3. {ECO:0000269|PubMed:16326928}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J610400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | MZEZAG1A | 0.0 | L18924.1 Corn ZAG1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807784.1 | 0.0 | MADS-box transcription factor 3-like | ||||
Swissprot | Q2V0P1 | 1e-128 | MAD58_ORYSJ; MADS-box transcription factor 58 | ||||
TrEMBL | A0A3L6RE12 | 0.0 | A0A3L6RE12_PANMI; MADS-box transcription factor 58 | ||||
STRING | Pavir.J04815.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP649 | 37 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 2e-93 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J610400.1.p |