PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J600300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 183aa MW: 19433.4 Da PI: 5.2245 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.6 | 1.7e-14 | 32 | 79 | 2 | 53 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 y GVr+++ +gr++AeIr p++ + r +lg+f+tae Aa a++ + ++ Pavir.J600300.1.p 32 EYLGVRRRP-WGRYAAEIRNPVT---KERRWLGTFDTAEAAAVAYDLSAISI 79 588******.**********654...5999****************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.37E-17 | 31 | 90 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-24 | 32 | 89 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.7E-24 | 32 | 96 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.653 | 32 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-8 | 33 | 44 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.21E-23 | 33 | 89 | No hit | No description |
Pfam | PF00847 | 1.3E-7 | 33 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-8 | 55 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MADAPVAHQA AASAQDLQQQ QQRRRRSRAS SEYLGVRRRP WGRYAAEIRN PVTKERRWLG 60 TFDTAEAAAV AYDLSAISIS GYAAARTNFY YPCGGATNLQ SQQPPPLPPH GPVQVAPVPP 120 SPLSEGSGIG STVDDCEYQQ LSAEEGGEEA GDDESLTIAA ILQSFRHQSA PSAAPSAPLC 180 LQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-15 | 31 | 89 | 13 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J600300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241762 | 2e-70 | AK241762.1 Oryza sativa Japonica Group cDNA, clone: J065205D04, full insert sequence. | |||
GenBank | AP005164 | 2e-70 | AP005164.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0054L03. | |||
GenBank | AP014964 | 2e-70 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 2e-70 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820790.1 | 1e-69 | ethylene-responsive transcription factor LEP-like | ||||
Swissprot | Q3E703 | 1e-27 | ERF88_ARATH; Ethylene-responsive transcription factor ERF088 | ||||
TrEMBL | A0A2T7D458 | 1e-72 | A0A2T7D458_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fb00452.1.p | 1e-129 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1885 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12890.1 | 6e-28 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J600300.1.p |