PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J599400.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 732aa    MW: 79820.3 Da    PI: 4.4179
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J599400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.42.9e-12181222346
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +WT eE +ll+++ + +Gg+ W+ Ia+++  ++t  qc +++++
  Pavir.J599400.2.p 181 SWTDEETLLLLEGLEIFGGK-WAEIAEHVA-TKTKTQCMLHFLQ 222
                        7*******************.*********.**********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5093411.828152IPR007526SWIRM domain
SuperFamilySSF466894.84E-5344IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.102.4E-4449IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM002912.8E-7119163IPR000433Zinc finger, ZZ-type
PROSITE profilePS501358.843119165IPR000433Zinc finger, ZZ-type
SuperFamilySSF578501.06E-9121158No hitNo description
PfamPF005694.8E-6122158IPR000433Zinc finger, ZZ-type
CDDcd023365.47E-21123167No hitNo description
PROSITE patternPS013570125151IPR000433Zinc finger, ZZ-type
PROSITE profilePS5129321.378177228IPR017884SANT domain
SMARTSM007176.4E-13178226IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-12178232IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-9180221IPR009057Homeodomain-like
PfamPF002491.4E-11181223IPR001005SANT/Myb domain
CDDcd001670.0018199223No hitNo description
PfamPF164953.0E-21618696IPR032451SMARCC, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MMKFHANPQL QLESKDLAEL SIGEIDARQE VLEFLDHWGL INFHPFPPAG QEESKPEASQ  60
DNSHDEDKAS LIDKLFKFEP VQSYMMPLPK KEDVGAPPPL PSLFPDPVLL EDVVAAAEPS  120
VEYHCNSCSV DCSRKRYHCR TQADFDLCCD CYNEGKFDPG MAKTDFILMD SSEVSGASGT  180
SWTDEETLLL LEGLEIFGGK WAEIAEHVAT KTKTQCMLHF LQMQIEDRFH DAEDINQNIP  240
GSTEQVTTEK GIAETSEKMD VEDKAEGKDT ADERASEKIE GNCEGTKTED ASVVENKDTQ  300
NSVSKDSAAS PNTEEPKQSS DEQPTAKENS ADVDTSGEKL SNFAIDILKS VFEAAGHSPE  360
YEGSFADAGN PVMALAAFLA GLVEDDSATT SCRSSLKAIS EVSPALQLAS RHCFILEEPP  420
NDLKDICVSV SNKNTDGDQT KDEEITKNSV DTEKKEINEN KDNSLSVKKH NNSSISQNDN  480
QGSDGKNVSC DDCPIKEAKT NNAMESGDST ATVDKSATDN TKGSNIGASN PKQVNDKSNV  540
EMEAPDDSSL KGKDRLNKTK DAVATPATQQ EDRQSETLEN GNMGEPNNIE SVAANEEKGS  600
IVTANQNDSI TRLKRAAATA ISAAAVKAKF LGDQEEYHIR RLTALMIERL FQKIEVKMSL  660
FAEIEQVVLR TREYTEKTRK KLLLERNAII AARMGALPSR PNQPGVAGNR LPPGYGNPAV  720
RPPNAMPRPS S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.182690.0leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.J599400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794429.10.0SWI/SNF complex subunit SWI3D-like isoform X3
TrEMBLA0A2S3IIP00.0A0A2S3IIP0_9POAL; Uncharacterized protein
STRINGPavir.J23096.1.p0.0(Panicum virgatum)