PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J599400.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 732aa MW: 79820.3 Da PI: 4.4179 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.4 | 2.9e-12 | 181 | 222 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE +ll+++ + +Gg+ W+ Ia+++ ++t qc +++++ Pavir.J599400.2.p 181 SWTDEETLLLLEGLEIFGGK-WAEIAEHVA-TKTKTQCMLHFLQ 222 7*******************.*********.**********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50934 | 11.828 | 1 | 52 | IPR007526 | SWIRM domain |
SuperFamily | SSF46689 | 4.84E-5 | 3 | 44 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.10 | 2.4E-4 | 4 | 49 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00291 | 2.8E-7 | 119 | 163 | IPR000433 | Zinc finger, ZZ-type |
PROSITE profile | PS50135 | 8.843 | 119 | 165 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF57850 | 1.06E-9 | 121 | 158 | No hit | No description |
Pfam | PF00569 | 4.8E-6 | 122 | 158 | IPR000433 | Zinc finger, ZZ-type |
CDD | cd02336 | 5.47E-21 | 123 | 167 | No hit | No description |
PROSITE pattern | PS01357 | 0 | 125 | 151 | IPR000433 | Zinc finger, ZZ-type |
PROSITE profile | PS51293 | 21.378 | 177 | 228 | IPR017884 | SANT domain |
SMART | SM00717 | 6.4E-13 | 178 | 226 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.27E-12 | 178 | 232 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.7E-9 | 180 | 221 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-11 | 181 | 223 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.0018 | 199 | 223 | No hit | No description |
Pfam | PF16495 | 3.0E-21 | 618 | 696 | IPR032451 | SMARCC, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 732 aa Download sequence Send to blast |
MMKFHANPQL QLESKDLAEL SIGEIDARQE VLEFLDHWGL INFHPFPPAG QEESKPEASQ 60 DNSHDEDKAS LIDKLFKFEP VQSYMMPLPK KEDVGAPPPL PSLFPDPVLL EDVVAAAEPS 120 VEYHCNSCSV DCSRKRYHCR TQADFDLCCD CYNEGKFDPG MAKTDFILMD SSEVSGASGT 180 SWTDEETLLL LEGLEIFGGK WAEIAEHVAT KTKTQCMLHF LQMQIEDRFH DAEDINQNIP 240 GSTEQVTTEK GIAETSEKMD VEDKAEGKDT ADERASEKIE GNCEGTKTED ASVVENKDTQ 300 NSVSKDSAAS PNTEEPKQSS DEQPTAKENS ADVDTSGEKL SNFAIDILKS VFEAAGHSPE 360 YEGSFADAGN PVMALAAFLA GLVEDDSATT SCRSSLKAIS EVSPALQLAS RHCFILEEPP 420 NDLKDICVSV SNKNTDGDQT KDEEITKNSV DTEKKEINEN KDNSLSVKKH NNSSISQNDN 480 QGSDGKNVSC DDCPIKEAKT NNAMESGDST ATVDKSATDN TKGSNIGASN PKQVNDKSNV 540 EMEAPDDSSL KGKDRLNKTK DAVATPATQQ EDRQSETLEN GNMGEPNNIE SVAANEEKGS 600 IVTANQNDSI TRLKRAAATA ISAAAVKAKF LGDQEEYHIR RLTALMIERL FQKIEVKMSL 660 FAEIEQVVLR TREYTEKTRK KLLLERNAII AARMGALPSR PNQPGVAGNR LPPGYGNPAV 720 RPPNAMPRPS S* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.18269 | 0.0 | leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J599400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794429.1 | 0.0 | SWI/SNF complex subunit SWI3D-like isoform X3 | ||||
TrEMBL | A0A2S3IIP0 | 0.0 | A0A2S3IIP0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J23096.1.p | 0.0 | (Panicum virgatum) |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J599400.2.p |