PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.J596000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 262aa MW: 27249.4 Da PI: 6.0399 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.8 | 2.8e-19 | 5 | 49 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++T+eEd l+v a++q+G++ W+tIar++ gRt++++k++w++ Pavir.J596000.1.p 5 RRAFTPEEDALIVAAHAQYGNK-WATIARMLH-GRTDNSVKNHWNST 49 678*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.07 | 1 | 54 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-20 | 1 | 52 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.15E-15 | 3 | 54 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-16 | 4 | 52 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-16 | 5 | 49 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.77E-13 | 7 | 50 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
PGVERRAFTP EEDALIVAAH AQYGNKWATI ARMLHGRTDN SVKNHWNSTL RRHRRAAAAA 60 ANGGALPLRP LAAAAGPPPV PLRHLKLADP EESAPASVVP FQPLDLKREE DDDEEDEDED 120 GTSEDSVLMA PPKKRPCLGA AHTHPSLSAA KQPEHTEPQP PTPAAEPVTS LTLSLPGGGG 180 GGTVSETPAL RGAAASAAST VDGAAKMRAK LEQDWPRLLP VIRQMIGEEV QRHLQGANVQ 240 ACSLVASPAG RAGAGAADGQ D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-15 | 1 | 52 | 52 | 103 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 2e-15 | 1 | 52 | 75 | 126 | MYB TRANSFORMING PROTEIN |
1mbj_A | 2e-15 | 3 | 52 | 1 | 50 | MYB PROTO-ONCOGENE PROTEIN |
1mbk_A | 2e-15 | 3 | 52 | 1 | 50 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-15 | 1 | 52 | 52 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 2e-15 | 1 | 52 | 52 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.J596000.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969854 | 1e-69 | EU969854.1 Zea mays clone 336503 mRNA sequence. | |||
GenBank | KJ727659 | 1e-69 | KJ727659.1 Zea mays clone pUT5586 MYB transcription factor (MYB119) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809452.1 | 1e-120 | transcription factor MYB77-like | ||||
TrEMBL | A0A2S3HDC1 | 1e-118 | A0A2S3HDC1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J19483.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP789 | 38 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 1e-20 | myb domain protein 77 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.J596000.1.p |